PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0052ss00110.1
Common NameLR48_Vigan04g072300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 453aa    MW: 49486.6 Da    PI: 5.3351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0052ss00110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.65.9e-10144166426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        e+C ++++tG Ck+G +CkF+H+
  Vang0052ss00110.1 144 ENCAYYLKTGSCKFGFNCKFNHP 166
                        89********************9 PP
2zf-CCCH21.54.2e-07172190725
                        SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                        ++++r+G Ck+G  CkF+H
  Vang0052ss00110.1 172 QYYLRSGGCKFGKACKFNH 190
                        59***************** PP
3zf-CCCH37.63.7e-12215238326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C++f+rtG Ck+G +CkF+H+
  Vang0052ss00110.1 215 EKECHYFMRTGSCKFGLNCKFNHP 238
                        679********************9 PP
4zf-CCCH28.72.2e-09348374127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C++f++tG Ck+ ++C+F+H++
  Vang0052ss00110.1 348 PGEPECSYFLKTGDCKFKSNCRFHHPK 374
                        5799*********************96 PP
5zf-CCCH35.61.5e-11396420327
                        S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                        +  C +++r+G+Ck+G+ CkF H+p
  Vang0052ss00110.1 396 QNVCTYYSRYGICKFGPACKFDHPP 420
                        568********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.89E-6139169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526140168IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012140167IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7144166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4146165IPR000571Zinc finger, CCCH-type
SMARTSM003566170192IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4172190IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.878172193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709212240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6213239IPR000571Zinc finger, CCCH-type
SMARTSM003568.3E-5214239IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10215238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4218237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155347375IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4347374IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-6349374IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5352376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6391418IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.488393421IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5393420IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9396420IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4398418IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
LLMGKRLSRT LDHDPQLSDL NHVAQDDDAL NRELQDKLDL KDVSESEDKG SNLEDGGGKL  60
SDEGAAPEGG KGEGSEDGGG GGGDDVGVGV VDDDCNGGDG WCNWIEYVNE SESDKVGGDV  120
EGVDSRDERS SGRDQQYPLR PEAENCAYYL KTGSCKFGFN CKFNHPLKRK NQYYLRSGGC  180
KFGKACKFNH KREKCSSASP IAELNFLGLP IRVGEKECHY FMRTGSCKFG LNCKFNHPDP  240
TAGGGDSPSR FGNGSSVSLQ GVSQSSISSW SSTRPLNEST PFVPMILSAN PGVSPQSSEW  300
DGYQAPVYLP ERNMHLPSTY VMNNPVMETN VYMHHQQQVQ VEEFPERPGE PECSYFLKTG  360
DCKFKSNCRF HHPKNRIARL PPCSFSNKGL PLRPDQNVCT YYSRYGICKF GPACKFDHPP  420
PLTMSGLDQQ SSYSNSASVD VAENGGVSDG NQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0052ss00110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422885.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
RefseqXP_017422886.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM41e-124C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0L9UC910.0A0A0L9UC91_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RFG00.0A0A0S3RFG0_PHAAN; Uncharacterized protein
STRINGXP_007137964.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-115C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]