PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vang0041ss00220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WOX | ||||||||
Protein Properties | Length: 375aa MW: 42459.4 Da PI: 9.9061 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.7 | 1.2e-10 | 42 | 99 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 R+++t++q++++ + ++ +ps+++ e+A++l + +e +V+ WF N+ + + Vang0041ss00220.1 42 RWRPTDDQIKIMTNIYNYgVTHPSRAQVFEIASRLrtfgEASEYNVQCWFNNHGNRVR 99 9****************88*********************************976666 PP | |||||||
2 | Wus_type_Homeobox | 61.2 | 2.3e-20 | 41 | 100 | 4 | 63 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 RW Pt +Qiki++++y+ G+ P+++++ +i+++L+++G+ ++ NV WF N+ R r+ Vang0041ss00220.1 41 LRWRPTDDQIKIMTNIYNYGVTHPSRAQVFEIASRLRTFGEASEYNVQCWFNNHGNRVRR 100 5*******************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.54E-8 | 41 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.6 | 42 | 101 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.76E-4 | 42 | 102 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-4 | 42 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.5E-8 | 42 | 99 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MWKLGLADQH GNWALQASME NEHFWAKMET WAWGPVQKLG LRWRPTDDQI KIMTNIYNYG 60 VTHPSRAQVF EIASRLRTFG EASEYNVQCW FNNHGNRVRR LQAEIDPTGT IFSLLPRYMY 120 VMRAPRLLDL FPIPIIIDDE RDERQIPPPM PPAFCTRAPS TELTLRSPPS VVSQRRDLLP 180 LAHPAVANYK PRRCPASAVA LCPSGHCKPP STVLSIAGDL RHHRNRYRQR VTAFSLSRLL 240 AVGDGMRGAW LGIMSRGVEE NGWRWWKGVH GWRDIAVSLS EDEGQRCSVL RIKCGSEARE 300 VRMLKMVLEG IGMKLKMLAA GVSCLCISDG LPVCLSLVRM EFRVRPWMIG VVSDGPVVMR 360 CSRVAVTVGE YGWR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vang0041ss00220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-166 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-11 | WUSCHEL related homeobox 2 |