PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0041ss00220.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WOX

Protein Properties

Length: 375aa MW: 42459.4 Da PI: 9.9061

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0041ss00220.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.7	1.2e-10	42	99	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 R+++t++q++++ + ++ +ps+++ e+A++l + +e +V+ WF N+ + + Vang0041ss00220.1 42 RWRPTDDQIKIMTNIYNYgVTHPSRAQVFEIASRLrtfgEASEYNVQCWFNNHGNRVR 99 9**************88*******************************976666 PP
2	Wus_type_Homeobox	61.2	2.3e-20	41	100	4	63
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 RW Pt +Qiki++++y+ G+ P+++++ +i+++L+++G+ ++ NV WF N+ R r+ Vang0041ss00220.1 41 LRWRPTDDQIKIMTNIYNYGVTHPSRAQVFEIASRLRTFGEASEYNVQCWFNNHGNRVRR 100 5*******************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.54E-8	41	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.6	42	101	IPR001356	Homeobox domain
CDD	cd00086	5.76E-4	42	102	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-4	42	100	IPR009057	Homeodomain-like
Pfam	PF00046	3.5E-8	42	99	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MWKLGLADQH GNWALQASME NEHFWAKMET WAWGPVQKLG LRWRPTDDQI KIMTNIYNYG 60 VTHPSRAQVF EIASRLRTFG EASEYNVQCW FNNHGNRVRR LQAEIDPTGT IFSLLPRYMY 120 VMRAPRLLDL FPIPIIIDDE RDERQIPPPM PPAFCTRAPS TELTLRSPPS VVSQRRDLLP 180 LAHPAVANYK PRRCPASAVA LCPSGHCKPP STVLSIAGDL RHHRNRYRQR VTAFSLSRLL 240 AVGDGMRGAW LGIMSRGVEE NGWRWWKGVH GWRDIAVSLS EDEGQRCSVL RIKCGSEARE 300 VRMLKMVLEG IGMKLKMLAA GVSCLCISDG LPVCLSLVRM EFRVRPWMIG VVSDGPVVMR 360 CSRVAVTVGE YGWR*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MWKLGLADQH GNWALQASME NEHFWAKMET WAWGPVQKLG LRWRPTDDQI KIMTNIYNYG  60
VTHPSRAQVF EIASRLRTFG EASEYNVQCW FNNHGNRVRR LQAEIDPTGT IFSLLPRYMY  120
VMRAPRLLDL FPIPIIIDDE RDERQIPPPM PPAFCTRAPS TELTLRSPPS VVSQRRDLLP  180
LAHPAVANYK PRRCPASAVA LCPSGHCKPP STVLSIAGDL RHHRNRYRQR VTAFSLSRLL  240
AVGDGMRGAW LGIMSRGVEE NGWRWWKGVH GWRDIAVSLS EDEGQRCSVL RIKCGSEARE  300
VRMLKMVLEG IGMKLKMLAA GVSCLCISDG LPVCLSLVRM EFRVRPWMIG VVSDGPVVMR  360
CSRVAVTVGE YGWR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0041ss00220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-166	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	2e-11	WUSCHEL related homeobox 2