PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0032ss01000.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 390aa    MW: 43856.4 Da    PI: 7.1115
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0032ss01000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-15104152148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+W++eEd +l+d++ + G+g +W + +++ g++R++k+c++rw++yl
  Vang0032ss01000.1 104 KGPWSPEEDRKLKDYIDKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 152
                        79*********************************************97 PP
2Myb_DNA-binding36.51.1e-11159201246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Vang0032ss01000.1 159 GDFSDEEDRIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 201
                        679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.3799152IPR017930Myb domain
SuperFamilySSF466896.79E-26101199IPR009057Homeodomain-like
SMARTSM007172.7E-11103154IPR001005SANT/Myb domain
PfamPF002491.3E-14104152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-23105159IPR009057Homeodomain-like
CDDcd001672.21E-8106152No hitNo description
PROSITE profilePS5129421.696153207IPR017930Myb domain
SMARTSM007171.0E-10157205IPR001005SANT/Myb domain
PfamPF002493.2E-10159201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-23160207IPR009057Homeodomain-like
CDDcd001673.61E-7161201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
LESVTILVAV PINSLVLFCV VFLSVSQTLD AFSLEKTNDR MCEPFYASQG LLFIRHKRYT  60
PNYHSDEKVR VWILRETDRG FSGNTQRERD MGRAPCCDKA SVKKGPWSPE EDRKLKDYID  120
KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN YLRPNIKHGD FSDEEDRIIC SLYVNIGSRW  180
SIIAAQLPGR TDNDIKNYWN TKLKKKLIGL LPLSHHTKQP SFPSSALQNP PPSPSSHQLY  240
GEYGNYIPVT ASFTGMEHLS LPSANYESTT PSVSQTFYQN QDSMVSVSPM QCYYPVADSM  300
LMFGSEGSCS SSDGSCTQGR EMNHNLMLSY NTNDGDKSCV GGCFDQTLTP LDYDLEDIKQ  360
LISSSSSSLN NNNVDENKRE EKAMYCCYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-261042077108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0032ss01000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432777.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A0S3SCI00.0A0A0S3SCI0_PHAAN; Uncharacterized protein
STRINGXP_007132317.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-73myb domain protein 36