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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Vang0021ss01400.1 |
| Common Name | LR48_Vigan05g188500 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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| Family |
WOX |
| Protein Properties |
Length: 198aa MW: 22487.5 Da PI: 10.2011 |
| Description |
WOX family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang0021ss01400.1 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.7 | 1.2e-19 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
+R+++t+eq+ Le+l+++ r+p+ae+++e +++l +++ ++V++WFqN++a++++
Vang0021ss01400.1 18 SRWSPTREQIAMLEDLYRQgMRTPNAEQIQEVTSRLraygHIQGKNVFYWFQNHKARQRQ 77
6*****************99**************************************97 PP
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| 2 | Wus_type_Homeobox | 112.9 | 1.6e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+RW+Pt eQi +Le+ly++G+rtPn+e+iq++t++L++yG+i++kNVfyWFQN+kaR+rqkq
Vang0021ss01400.1 17 VSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQ 79
68***********************************************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 198 aa
Download sequence Send
to blast |
MGSRSAMRRE PSRTHSVSRW SPTREQIAML EDLYRQGMRT PNAEQIQEVT SRLRAYGHIQ 60
GKNVFYWFQN HKARQRQKQK LESIAYSNSF LQASHPICQN VVCAPFYPQQ SGMNFYPQPE 120
KVVATGGIVG TVVPFGMLKI CDGQQIYQQL RQRVQPDYNY SINDKKTLNL FPLHPTGILK 180
EKTVNQGSSH ASASGCH*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-167 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
Plant Cell Physiol., 2015. 56(9): p. 1855-66
[PMID:26220906] - Yang K, et al.
Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
[PMID:26460024] - Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
BMC Plant Biol., 2016. 16: p. 19
[PMID:26786587] - Zhang Z,Tucker E,Hermann M,Laux T
A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
Dev. Cell, 2017. 40(3): p. 264-277.e4
[PMID:28171749]
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