PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7BS_4D5DE99CC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 81aa MW: 9100.53 Da PI: 4.4296 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54 | 2.2e-17 | 1 | 31 | 20 | 50 |
HHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstgklyeys 50 ++KKA+ELSvLCdaeva+++fs+ g+lye+ Traes_7BS_4D5DE99CC.1 1 LFKKAFELSVLCDAEVALVVFSPAGRLYEFV 31 8*****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.61 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-15 | 1 | 30 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-4 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-16 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 81 aa Download sequence Send to blast |
LFKKAFELSV LCDAEVALVV FSPAGRLYEF VSSDTSVEQI FGRCKDIPDT VIDDLNIAAR 60 DPRGYCNIQV RNMYVCVYML G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020181042.1 | 3e-42 | MADS-box transcription factor 51-like | ||||
TrEMBL | A0A453RMX5 | 2e-50 | A0A453RMX5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7BS_4D5DE99CC.1 | 3e-53 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-15 | AGAMOUS-like 14 |
Publications ? help Back to Top | |||
---|---|---|---|
|