PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DS_903A67B97.2 | ||||||||
Common Name | wox2, WOX2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 322aa MW: 34475.7 Da PI: 10.6945 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.3e-18 | 41 | 100 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+tkeq+ +Le l+++ r+p+ae++++ +++l ++ ++V++WFqN++a++++ Traes_5DS_903A67B97.2 41 ARWTPTKEQVGVLEGLYRQgLRTPTAEQIQQVTARLqkhgPIEGKNVFYWFQNHKARQRQ 100 7*****************99****************99999*****************96 PP | |||||||
2 | Wus_type_Homeobox | 108.9 | 2.9e-35 | 40 | 102 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RWtPt+eQ+ +Le ly++GlrtP++e+iq++ta+L+++G ie+kNVfyWFQN+kaR+rq+q Traes_5DS_903A67B97.2 40 NARWTPTKEQVGVLEGLYRQGLRTPTAEQIQQVTARLQKHGPIEGKNVFYWFQNHKARQRQRQ 102 78***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.22 | 36 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-4 | 38 | 105 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.1E-16 | 41 | 100 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-7 | 41 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-11 | 41 | 106 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MESVEHQQQA ATRSRSPSLP AAPPSPPLSP NSAAAAALAN ARWTPTKEQV GVLEGLYRQG 60 LRTPTAEQIQ QVTARLQKHG PIEGKNVFYW FQNHKARQRQ RQKQQAFDYF SKQFRRPQPL 120 PVLHRPAAHP SLPPIPLHAP PPPPSHVSSA TTPDPPAPPA CNRQAMYGQQ PSYVTAAAAV 180 AATQAAANAS YYMQTQAQAP MLHPRVEAVA HDKAQTQAQA TMYHQAAAPN SAGTQQPRAL 240 QLPPAAGTHG PPAARSRRPE TLNLFPLHPT FAIPEKPRPA GIAGSATPTG PSASGSGSFS 300 WEPESPRGDA PLPLYDFFGA GR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG764579 | 0.0 | HG764579.1 Triticum aestivum mRNA for WOX homeodomain transcription factor (wox2 gene). | |||
GenBank | KF718831 | 0.0 | KF718831.1 Triticum aestivum cultivar liangmai 4 WOX homeodomain transcription factor (WOX2) mRNA, complete cds. | |||
GenBank | KJ459391 | 0.0 | KJ459391.1 Aegilops tauschii voucher AS2407 WOX homeodomain transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164536.1 | 0.0 | WUSCHEL-related homeobox 5-like | ||||
Swissprot | A2WWU7 | 2e-58 | WOX5_ORYSI; WUSCHEL-related homeobox 5 | ||||
Swissprot | Q8LR86 | 2e-58 | WOX5_ORYSJ; WUSCHEL-related homeobox 5 | ||||
TrEMBL | A0A023R759 | 0.0 | A0A023R759_AEGTA; WOX homeodomain transcription factor | ||||
TrEMBL | A0A453JXU3 | 0.0 | A0A453JXU3_AEGTS; Uncharacterized protein | ||||
TrEMBL | W0Z680 | 0.0 | W0Z680_WHEAT; WOX homeodomain transcription factor | ||||
STRING | Traes_5DS_903A67B97.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 5e-19 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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