PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_92CBBE968.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 36519.3 Da PI: 9.5487 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + Traes_5DL_92CBBE968.1 19 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 64 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 73 | 115 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed+ +++a++++G++ W+tIar + gRt++ +k++w++ Traes_5DL_92CBBE968.1 73 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 115 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.716 | 14 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.22E-31 | 16 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 18 | 67 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 19 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 20 | 72 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.84E-15 | 21 | 63 | No hit | No description |
SMART | SM00717 | 7.2E-14 | 70 | 118 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.747 | 71 | 120 | IPR017930 | Myb domain |
CDD | cd00167 | 4.40E-11 | 73 | 116 | No hit | No description |
Pfam | PF00249 | 5.8E-14 | 73 | 115 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-23 | 73 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAACRAGGGG GGRDVDRIKG PWSPEEDDAL QRLVGRHGAR NWSLISKSIP GRSGKSCRLR 60 WCNQLSPQVE HRPFTPDEDD TILRAHARFG NKWATIARLL SGRTDNAIKN HWNSTLKRKY 120 SSSSSTSASA SASPADDAMA NDDDDRRPLK RTSSDGYPGL CFSPGSPSGS DLSDSSHQSL 180 PSVMPSAASQ QPHVYRPVAR AGGVVVLPTA TPQLPQPSPP SPPPPPPPPA TSLSLSLSLP 240 GLDAPEPAPV AQAQPMSMPP PPAHVPVQPA AAPQMPPPMP FQLQPPPVPQ ARAAAPFNGE 300 FLSMMQEMIR IEVRNYMSGF DPRSSPADGV HAAKRMMSMA KIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-39 | 16 | 119 | 4 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355241 | 0.0 | AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020146152.1 | 0.0 | transcription factor MYB44-like | ||||
TrEMBL | A0A3B6MPQ7 | 0.0 | A0A3B6MPQ7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5DL_92CBBE968.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 8e-66 | myb domain protein 70 |
Publications ? help Back to Top | |||
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