PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_51643AC9F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 427aa MW: 46645.3 Da PI: 8.7183 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 3.9e-05 | 264 | 283 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Traes_5DL_51643AC9F.1 264 FSCPVCFKTFNRYNNMQMHM 283 89*****************9 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 345 | 365 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Traes_5DL_51643AC9F.1 345 CRRCGKAFAVKGDWRTHEKNC 365 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-6 | 264 | 283 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.32E-7 | 264 | 286 | No hit | No description |
PROSITE profile | PS50157 | 9.64 | 264 | 291 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 266 | 286 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.32E-7 | 338 | 363 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 341 | 363 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 343 | 363 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
HKLSSQAWEA RSRSASYPEL EPWRTRTRPS SRTTNSTATT SHPRRCRRQW RPRRRLLRSP 60 PTPPAPSSPR RLLLPXXXXX XLREALPLLS LAPASRRSRE RRSGPGPDDS DDGDEEDGEE 120 GKQAPGPAAS SSLHHNQQLA GRQLFADLNS KATDDAMDSE AGGAAGDVTV ALHIGLPSAG 180 TAAGLISGIS AAARAARDDE EEEDDRVSRE LSGGGAEGDG DDDGENEAAV APVLGFASTP 240 IGRLNKGQYW IPTPTQILIG PTQFSCPVCF KTFNRYNNMQ MHMWGHGSQY RKGPESLRGI 300 QPTAMLRLPC YCCAPGCRNN VDHPRAXXXX XTHYKRKHGL KPFLCRRCGK AFAVKGDWRT 360 HEKNCGKLWY CLCGSEFKHK RSLKDHARAF GQGHGALGGA GLDDDDDCAV SDVXXXXXXX 420 XVAARSP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356814 | 0.0 | AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180661.1 | 1e-176 | zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-114 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A3B6LP54 | 0.0 | A0A3B6LP54_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UDH7 | 0.0 | A0A446UDH7_TRITD; Uncharacterized protein | ||||
STRING | Traes_5DL_51643AC9F.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-102 | C2H2 family protein |
Publications ? help Back to Top | |||
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