PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5DL_41E3B1B23.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 198aa MW: 21668.5 Da PI: 6.9226 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 51 | 101 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+W+AeIrdp+ + r++lg++ tae Aa+a+++a+++++g+ Traes_5DL_41E3B1B23.1 51 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 101 6********.**********75....44*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.62E-22 | 51 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.7E-36 | 51 | 114 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.487 | 51 | 108 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 51 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.23E-17 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 3.6E-11 | 52 | 63 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.9E-13 | 52 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-11 | 74 | 90 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MCGGAIIYDY IPAHRRRVST ADFWPDANDH SDAHSTAPDK APRAKRGRTN QYRGIRQRPW 60 GKWAAEIRDP VKGVRVWLGT YPTAEAAARA YDRAARRIRG AKAKVNFPNE ILVGAPAHEA 120 PCTMAAVLPS PKKEEEPAAC SCEEVKALSE ELMAYESYMS FLGVPYMEGG AAAAPAAEEA 180 PAELWSFEDS YYPGPLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 51 | 114 | 5 | 69 | ATERF1 |
3gcc_A | 1e-22 | 51 | 114 | 5 | 69 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367417 | 0.0 | AK367417.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2056M04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163333.1 | 1e-143 | ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A3B6MVF2 | 1e-142 | A0A3B6MVF2_WHEAT; Ethylene response factor | ||||
TrEMBL | A0A453LDL5 | 1e-142 | A0A453LDL5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DL_41E3B1B23.1 | 1e-143 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11547 | 25 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-29 | ERF family protein |
Publications ? help Back to Top | |||
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