PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_439DB52FE.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 284aa    MW: 30876.8 Da    PI: 10.9232
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_439DB52FE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18463357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            R+t+tkeq+ +Le l+++  r+p+ae++++ +++l     ++ ++V++WFqN++a++++
  Traes_5BS_439DB52FE.1  4 ARWTPTKEQVGVLEGLYRQgLRTPTAEQIQQVTARLqkhgPIEGKNVFYWFQNHKARQRQ 63
                           7*****************99****************99999*****************96 PP
2Wus_type_Homeobox109.22.3e-35365365
      Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                           ++RWtPt+eQ+ +Le ly++GlrtP++e+iq++ta+L+++G ie+kNVfyWFQN+kaR+rq+q
  Traes_5BS_439DB52FE.1  3 NARWTPTKEQVGVLEGLYRQGLRTPTAEQIQQVTARLQKHGPIEGKNVFYWFQNHKARQRQRQ 65
                           78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.398164IPR001356Homeobox domain
SMARTSM003892.3E-4168IPR001356Homeobox domain
SuperFamilySSF466892.63E-11469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-7463IPR009057Homeodomain-like
PfamPF000462.6E-16463IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
LANARWTPTK EQVGVLEGLY RQGLRTPTAE QIQQVTARLQ KHGPIEGKNV FYWFQNHKAR  60
QRQRQKQQAF DYFSKQFRRP QPLPVLHRPA AHPSLPPIPL QAPPPHMSSA TPPDLPASPA  120
CNRQAMHRQQ PSYVTAAAAV AATQAAANAS HYMQTQTQTP MLYPGVEAVA HDKVQTQAPA  180
TMYHQAPAQN NAGTQQPRAL QLPPAAGTHG PPAARSRRPE TLNLFPLHPT FAIPQKTRPA  240
GIAGSATPTA TVPSASGSGS FSWEPESPRG DASLPLYDFF GVGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG7645790.0HG764579.1 Triticum aestivum mRNA for WOX homeodomain transcription factor (wox2 gene).
GenBankKF7188310.0KF718831.1 Triticum aestivum cultivar liangmai 4 WOX homeodomain transcription factor (WOX2) mRNA, complete cds.
GenBankKJ4593910.0KJ459391.1 Aegilops tauschii voucher AS2407 WOX homeodomain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164536.11e-140WUSCHEL-related homeobox 5-like
SwissprotA2WWU74e-59WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR864e-59WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A3B6LFZ00.0A0A3B6LFZ0_WHEAT; Uncharacterized protein
TrEMBLA0A446TY780.0A0A446TY78_TRITD; Uncharacterized protein
STRINGTraes_5BS_439DB52FE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-24WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]