PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BS_439DB52FE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 284aa MW: 30876.8 Da PI: 10.9232 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 4 | 63 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+t+tkeq+ +Le l+++ r+p+ae++++ +++l ++ ++V++WFqN++a++++ Traes_5BS_439DB52FE.1 4 ARWTPTKEQVGVLEGLYRQgLRTPTAEQIQQVTARLqkhgPIEGKNVFYWFQNHKARQRQ 63 7*****************99****************99999*****************96 PP | |||||||
2 | Wus_type_Homeobox | 109.2 | 2.3e-35 | 3 | 65 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RWtPt+eQ+ +Le ly++GlrtP++e+iq++ta+L+++G ie+kNVfyWFQN+kaR+rq+q Traes_5BS_439DB52FE.1 3 NARWTPTKEQVGVLEGLYRQGLRTPTAEQIQQVTARLQKHGPIEGKNVFYWFQNHKARQRQRQ 65 78***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.398 | 1 | 64 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-4 | 1 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.63E-11 | 4 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-7 | 4 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.6E-16 | 4 | 63 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
LANARWTPTK EQVGVLEGLY RQGLRTPTAE QIQQVTARLQ KHGPIEGKNV FYWFQNHKAR 60 QRQRQKQQAF DYFSKQFRRP QPLPVLHRPA AHPSLPPIPL QAPPPHMSSA TPPDLPASPA 120 CNRQAMHRQQ PSYVTAAAAV AATQAAANAS HYMQTQTQTP MLYPGVEAVA HDKVQTQAPA 180 TMYHQAPAQN NAGTQQPRAL QLPPAAGTHG PPAARSRRPE TLNLFPLHPT FAIPQKTRPA 240 GIAGSATPTA TVPSASGSGS FSWEPESPRG DASLPLYDFF GVGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG764579 | 0.0 | HG764579.1 Triticum aestivum mRNA for WOX homeodomain transcription factor (wox2 gene). | |||
GenBank | KF718831 | 0.0 | KF718831.1 Triticum aestivum cultivar liangmai 4 WOX homeodomain transcription factor (WOX2) mRNA, complete cds. | |||
GenBank | KJ459391 | 0.0 | KJ459391.1 Aegilops tauschii voucher AS2407 WOX homeodomain transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164536.1 | 1e-140 | WUSCHEL-related homeobox 5-like | ||||
Swissprot | A2WWU7 | 4e-59 | WOX5_ORYSI; WUSCHEL-related homeobox 5 | ||||
Swissprot | Q8LR86 | 4e-59 | WOX5_ORYSJ; WUSCHEL-related homeobox 5 | ||||
TrEMBL | A0A3B6LFZ0 | 0.0 | A0A3B6LFZ0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TY78 | 0.0 | A0A446TY78_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BS_439DB52FE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7509 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-24 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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