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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_F5D379AFC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25664.5 Da PI: 6.2408 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 105 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r r +lg+f+tae+Aa+a++ a+++++g Traes_5BL_F5D379AFC.1 105 VYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEDAARAYDLAALEFRG 154 69*******.**********82....48*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 105 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.383 | 105 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 105 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-23 | 105 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-38 | 105 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.35E-30 | 106 | 162 | No hit | No description |
PRINTS | PR00367 | 2.7E-11 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAMATANQDG AATFHDHRGG TAATELHGRT ISSEQEHGII VAALRHVVSG YTTAPPEVVV 60 AVACGRCGID GCLGCDFFGA TEPEAVAVAV PVGGVQRKRR RKKNVYRGVR QRPWGKWAAE 120 IRDPRRAVRK WLGTFDTAED AARAYDLAAL EFRGPRARLN FPCSDEPLPG HGSDNGGGGT 180 GAAPQNETLT TPSPCSTDAG QRTPGEWQLG ADGAGDQVWE GLQDLMTIDG QDPWFAPFSS 240 PA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-21 | 106 | 163 | 6 | 64 | ATERF1 |
3gcc_A | 9e-21 | 106 | 163 | 6 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 100 | RKRRR |
2 | 96 | 102 | RKRRRKK |
3 | 96 | 103 | RKRRRKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367480 | 0.0 | AK367480.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057P20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020177674.1 | 1e-140 | ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 3e-30 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A3B6LN02 | 1e-176 | A0A3B6LN02_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UBU2 | 1e-176 | A0A446UBU2_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_F5D379AFC.1 | 1e-177 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 3e-22 | redox responsive transcription factor 1 |