PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B6A784025.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 289aa    MW: 31806.4 Da    PI: 12.4024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B6A784025.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-154192255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                            y+GVr++ + g+Wv+e+r+    g k  r +lg+f tae+Aa+a++ a ++l g
  Traes_5BL_B6A784025.1 41 LYRGVRQRGRVGQWVCEVRV---AGvKGSRLWLGTFTTAEMAARAHDTAVLALSG 92
                           69***************999...46666*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-94090IPR001471AP2/ERF domain
CDDcd000181.88E-1740102No hitNo description
SuperFamilySSF541711.77E-1741102IPR016177DNA-binding domain
SMARTSM003803.8E-2041106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2741102IPR001471AP2/ERF domain
PROSITE profilePS5103219.78341100IPR001471AP2/ERF domain
PRINTSPR003673.4E-54253IPR001471AP2/ERF domain
PRINTSPR003673.4E-56682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDVADAASPS GQEQQGHRTV SSEPPKRPAG RTKVHETRHP LYRGVRQRGR VGQWVCEVRV  60
AGVKGSRLWL GTFTTAEMAA RAHDTAVLAL SGRAACLNFA DSAWRMLPVL AAGSFGFGSA  120
REIKAAVAVA VVAFQKEQII PVAVAVVAIQ KQQIIPVAVA VVAIQKQQII PSPSWRSRSS  180
RFQWPSPSWR SRNSRSQSPS PSWRFIGSRF QSRAREPPAR AALCFTCRPA TCWSSTRSSG  240
LAAWRPGRTT RAWRRGCSWH RRAKERGRRT ASRAASRRRY GATCSPNLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9872260.0JN987226.1 Triticum aestivum AP2 domain CBF protein (CBFIVd) pseudogene, CBFIVd-B22b allele, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167760.11e-103dehydration-responsive element-binding protein 1B-like
TrEMBLA0A446UGR80.0A0A446UGR8_TRITD; Uncharacterized protein
TrEMBLA0MPM40.0A0MPM4_WHEAT; CBFIVd-B22
STRINGTraes_5BL_B6A784025.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.16e-29dehydration response element B1A
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]