PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_63E444E80.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 309aa    MW: 34192.5 Da    PI: 4.5749
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_63E444E80.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-1673123155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GVr ++ +g+W+AeIrdp+    + +r ++g+f ++e Aa+a++a r++ + 
  Traes_5BL_63E444E80.2  73 SKYPGVRLRS-WGKWAAEIRDPV----SkTRKWIGTFTSEEAAAAAYEAERNRVRT 123
                            89*****998.**********64....44**********88999999998988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.54E-1273104No hitNo description
SuperFamilySSF541712.09E-1473123IPR016177DNA-binding domain
PfamPF008471.3E-873116IPR001471AP2/ERF domain
SMARTSM003801.7E-1274135IPR001471AP2/ERF domain
PROSITE profilePS5103216.64774133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-1874122IPR001471AP2/ERF domain
PRINTSPR003671.8E-67586IPR001471AP2/ERF domain
PRINTSPR003671.8E-697113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MMVPCSRKVR ISCCDPDATD SSDEDDRHAK KEKRMTMEVL VPVKTSGPLK SRKTLVPCGT  60
KKSMGTEKKQ PTSKYPGVRL RSWGKWAAEI RDPVSKTRKW IGTFTSEEAA AAAYEAERNR  120
VRTEMLAIKS RSPPSEHEAV SSEATVSCVS SSVSSGDQKA QEVHKLASME IDPDTADESL  180
LHCSPEPLGK EIQVDAFLGR MNVDESLVHC SSTPSDEEIP VDAFRSQMNE LPIGDYVCAT  240
DKLSLDDISR LADMFPVNDF VDTTGEPPGD DYIGLADISH LPMPMFELDA ELNWEGFDFA  300
SMEHELEKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201436.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A3B6LL100.0A0A3B6LL10_WHEAT; Uncharacterized protein
STRINGTraes_5BL_63E444E80.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.17e-12ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]