PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_C4CB3D5AF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25327 Da    PI: 10.0926
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_C4CB3D5AF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.22.6e-2471121151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                            k ie+ + rqv fskRr g++KKA+EL  LCdaeva+++fs+ g+lyey+s
  Traes_4DL_C4CB3D5AF.1  71 KXIEDRTSRQVRFSKRRSGLFKKAFELGLLCDAEVALLVFSPAGRLYEYAS 121
                            68***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.2E-2642122IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2884267IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-64373IPR002100Transcription factor, MADS-box
PfamPF003192.2E-55171IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.37163123IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-226585IPR002100Transcription factor, MADS-box
CDDcd002651.19E-3171132No hitNo description
SuperFamilySSF554557.06E-2671139IPR002100Transcription factor, MADS-box
PfamPF003191.1E-2373119IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-2285100IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-22100121IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEGPVPSLSL IFARSPLHPI IERRTPASER QPEEEEARRG IARRGPVELR RIEDRTSRQG  60
RFSKRRSGLF KXIEDRTSRQ VRFSKRRSGL FKKAFELGLL CDAEVALLVF SPAGRLYEYA  120
SSSIEDTYDR YQAFGGAGKN LNEGGASTNS DGDPSNIQSR LKEIASWSLQ NNADDADASE  180
LEKLEKLLTD ALENTKSKKM LAQRNSGART SASGANSISL RGQEEGRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-15731351173Myocyte-specific enhancer factor 2B
1tqe_Q4e-15731351173Myocyte-specific enhancer factor 2B
1tqe_R4e-15731351173Myocyte-specific enhancer factor 2B
1tqe_S4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_A4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_B4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_C4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_D4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_E4e-15731351173Myocyte-specific enhancer factor 2B
6c9l_F4e-15731351173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123660.0DQ512366.1 Triticum aestivum MADS-box transcription factor TaAGL33 (AGL33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149861.11e-142MADS-box transcription factor 51-like
RefseqXP_020149862.11e-142MADS-box transcription factor 51-like
SwissprotQ9XJ612e-70MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A3B6JPK51e-141A0A3B6JPK5_WHEAT; Uncharacterized protein
STRINGTraes_4DL_C4CB3D5AF.11e-162(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-27AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]