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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_4DL_C4CB3D5AF.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
M-type_MADS |
Protein Properties |
Length: 228aa MW: 25327 Da PI: 10.0926 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_4DL_C4CB3D5AF.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 76.2 | 2.6e-24 | 71 | 121 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k ie+ + rqv fskRr g++KKA+EL LCdaeva+++fs+ g+lyey+s
Traes_4DL_C4CB3D5AF.1 71 KXIEDRTSRQVRFSKRRSGLFKKAFELGLLCDAEVALLVFSPAGRLYEYAS 121
68***********************************************86 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 9.2E-26 | 42 | 122 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.288 | 42 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.27E-6 | 43 | 73 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-5 | 51 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.371 | 63 | 123 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-22 | 65 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.19E-31 | 71 | 132 | No hit | No description |
SuperFamily | SSF55455 | 7.06E-26 | 71 | 139 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-23 | 73 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-22 | 85 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.5E-22 | 100 | 121 | IPR002100 | Transcription factor, MADS-box |
Sequence ? help Back to Top |
Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MEGPVPSLSL IFARSPLHPI IERRTPASER QPEEEEARRG IARRGPVELR RIEDRTSRQG 60 RFSKRRSGLF KXIEDRTSRQ VRFSKRRSGL FKKAFELGLL CDAEVALLVF SPAGRLYEYA 120 SSSIEDTYDR YQAFGGAGKN LNEGGASTNS DGDPSNIQSR LKEIASWSLQ NNADDADASE 180 LEKLEKLLTD ALENTKSKKM LAQRNSGART SASGANSISL RGQEEGRS
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-15 | 73 | 135 | 11 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | DQ512366 | 0.0 | DQ512366.1 Triticum aestivum MADS-box transcription factor TaAGL33 (AGL33) mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kim SL,Lee S,Kim HJ,Nam HG,An G
OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a. Plant Physiol., 2007. 145(4): p. 1484-94 [PMID:17951465] - Brenchley R, et al.
Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]
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