PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_591F7718A.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 21887.7 Da PI: 8.4969 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.2e-16 | 70 | 118 | 4 | 55 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 GVr ++ +g+++AeIrd + ng +r++lg+f+t++ Aa a+++a+ + +g Traes_4BS_591F7718A.1 70 IGVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPDAAALACDQAAFSVRG 118 6******.**********44465..**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.915 | 68 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 69 | 80 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-19 | 69 | 128 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.3E-11 | 70 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 71 | 126 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.67E-15 | 71 | 127 | No hit | No description |
SMART | SM00380 | 8.8E-29 | 71 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-7 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVIDHQLLSF LMEEATSSSN GSSPSSPTSP ASAWEAANSS PRGEIMTAPA AWPASDPGRS 60 AGSAPDSPLI GVRKRPWGKY AAEIRDSTRN GARVWLGTFD TPDAAALACD QAAFSVRGPA 120 AVLNFPVKLV QESLRALGLG VGRAAGDSPA LALKRRHCIR KRNPKNKRRT GTSATATAVA 180 PSSSSPTCVL ELEDLGADYL EELLTLSDM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-25 | 58 | 126 | 5 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166253.1 | 2e-86 | ethylene-responsive transcription factor ERF094-like | ||||
Swissprot | A0A3Q7I5Y9 | 8e-41 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A3B6IP43 | 1e-119 | A0A3B6IP43_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RSM0 | 1e-119 | A0A446RSM0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_591F7718A.1 | 1e-148 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 1e-30 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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