PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_39AE2989D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 246aa    MW: 26637.9 Da    PI: 7.0084
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_39AE2989D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-16103151455
                    AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             GVr ++ +g+++AeIrd + ng  +r++lg+f+t+  Aa a+++a+ + +g
  Traes_4BL_39AE2989D.1 103 IGVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFDTPHAAALAYDQAAFSVRG 151
                            6******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.995101159IPR001471AP2/ERF domain
PRINTSPR003673.4E-7102113IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-21102161IPR016177DNA-binding domain
PfamPF008472.9E-11103151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-27104159IPR001471AP2/ERF domain
CDDcd000181.40E-16104160No hitNo description
SMARTSM003809.9E-32104165IPR001471AP2/ERF domain
PRINTSPR003673.4E-7125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MELPTYDGFH CYHGSSISFS SNTHYTHHQL PPQAQAQVHA DTEIDHQLFA FSFPMEATST  60
SFTTTPPAAS AWQEIVTVPV ASPSLLPQGS SSSSRDTPDS PLIGVRKRPW GKYAAEIRDS  120
TRNGARVWLG TFDTPHAAAL AYDQAAFSVR GPAAVLNFPV KLVQESLRTL DIGCAAAGDS  180
PALALKRRHC IRKRRPNKKR MSRATATAAE ATRQEAATAS SLSTCVLELE DLGADYLDEL  240
LALSEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-241041591772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175241.11e-147ethylene-responsive transcription factor ERF094-like
SwissprotA0A3Q7I5Y92e-42ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3B6IYC60.0A0A3B6IYC6_WHEAT; Uncharacterized protein
STRINGTraes_4BL_39AE2989D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-41ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]