PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_9079D6B71.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 158aa MW: 17980.8 Da PI: 8.4986 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.7e-21 | 22 | 81 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k Traes_3AS_9079D6B71.1 22 RQRWTPTQMQLQILENIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSK 81 89*****************99*************************************98 PP | |||||||
2 | Wus_type_Homeobox | 101 | 8.6e-33 | 21 | 84 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR++ kq Traes_3AS_9079D6B71.1 21 ARQRWTPTQMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKWKQ 84 789**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 16 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.188 | 18 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-14 | 20 | 87 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-18 | 21 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-12 | 22 | 84 | No hit | No description |
Pfam | PF00046 | 4.5E-19 | 22 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSLDNLYCDP LMVHGGHKIT ARQRWTPTQM QLQILENIFD QGNGTPSKQK IKDITAELSQ 60 HGQISETNVY NWFQNRRARS KWKQAASSLP NNAESEAEGD EESLTDKKPR SDGSQQQNMA 120 VRAHNPERIS EMHRHFDAAE RGQVRGPKMY GSSNDSSR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 83 | RRARSKWKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188039.1 | 1e-100 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-68 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A446PF87 | 1e-107 | A0A446PF87_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AS_9079D6B71.1 | 1e-116 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-42 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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