PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_D2EF60FE1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20978.2 Da PI: 11.6749 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.6 | 6.5e-13 | 81 | 114 | 3 | 40 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Traes_2DS_D2EF60FE1.1 81 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAE 114 9*******.**********843...4**********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.094 | 80 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-12 | 80 | 114 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.7E-10 | 80 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-18 | 80 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-15 | 81 | 114 | No hit | No description |
Pfam | PF00847 | 2.4E-7 | 81 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-9 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MCGGAIISDF TPERDHRGGS KRSLCTADFW PHAAAXAFDD PTGHHDFYPA DLTGACSFPP 60 QHQAAAAGEE PSRKRERKTM YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEXXXXXX 120 XXXPPHPRDQ GQGQLPQRGP AARPGRLRRR QRRRLLPPAV VHGRCRRAGD GGGVRAPAAP 180 AGRARDGALE L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 87 | KRERKTMYRGIRRRP |
2 | 148 | 153 | RRQRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976700 | 8e-52 | EU976700.1 Zea mays clone 987910 ERF-like protein mRNA, complete cds. | |||
GenBank | EU976870 | 8e-52 | EU976870.1 Zea mays clone 992413 mRNA sequence. | |||
GenBank | KJ728348 | 8e-52 | KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195438.1 | 5e-76 | ethylene-responsive transcription factor ERF071-like isoform X1 | ||||
TrEMBL | A0A3B6D7D6 | 1e-74 | A0A3B6D7D6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453APX3 | 1e-74 | A0A453APX3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_D2EF60FE1.1 | 1e-123 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-30 | ethylene-responsive element binding protein |
Publications ? help Back to Top | |||
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