PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_9E90C2488.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 257aa    MW: 26690.6 Da    PI: 8.8388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_9E90C2488.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.7e-17102151355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            + GVr ++ +g+++AeIrd + ng  +r++lg+fg++e Aa a+++a+ + +g
  Traes_2AL_9E90C2488.1 102 FIGVRTRP-WGKYAAEIRDSTRNG--ARVWLGTFGSPEAAAMAYDQAAFSARG 151
                            78***999.**********44465..**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-29101165IPR001471AP2/ERF domain
PROSITE profilePS5103220.323101159IPR001471AP2/ERF domain
PRINTSPR003674.9E-7102113IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-20102161IPR016177DNA-binding domain
CDDcd000189.85E-13102160No hitNo description
Gene3DG3DSA:3.30.730.104.7E-26102160IPR001471AP2/ERF domain
PfamPF008471.0E-11102151IPR001471AP2/ERF domain
PRINTSPR003674.9E-7125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEQHFAGTFP PGSYHQHRCY NAAAAAPSSD YDTSDMDDMT FLSTLLESTD HASCPDPSLS  60
SSSSSSDMTG VGAAAPHVPA GSSSPKRRGH HAPAAMPIAN DFIGVRTRPW GKYAAEIRDS  120
TRNGARVWLG TFGSPEAAAM AYDQAAFSAR GDAAVLNFPV ERVRDSLRAL ALGAVVGSPV  180
LALKRRHRMR XAREAAAPGC RRAGGSPVCD DRCGGAGGPR RRVPGGAPPG VRAAHGSFPH  240
NGDGVVLTLQ ACLLGLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-231021611574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276837e-59KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148997.11e-101ethylene-responsive transcription factor 1B-like
TrEMBLA0A3B6B5P71e-134A0A3B6B5P7_WHEAT; Uncharacterized protein
STRINGTraes_2AL_9E90C2488.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-30ethylene response factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]