PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_E50CDDF05.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 267aa MW: 29146.7 Da PI: 8.467 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 19 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Traes_1DS_E50CDDF05.1 19 TRWCPTPEQLMILEEMYRGgLRTPNASQIQQITAHLahygRIEGKNVFYWFQNHKARDRQ 78 8*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 119.5 | 1.5e-38 | 18 | 79 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iLee+y+ GlrtPn+++iq+ita+L++yG+ie+kNVfyWFQN+kaR+rqk Traes_1DS_E50CDDF05.1 18 TTRWCPTPEQLMILEEMYRGGLRTPNASQIQQITAHLAHYGRIEGKNVFYWFQNHKARDRQK 79 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.4E-4 | 16 | 83 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.0E-18 | 19 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.42E-5 | 19 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-7 | 19 | 78 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.28E-10 | 19 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.766 | 24 | 79 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAATATATAA ATSVVTGTTR WCPTPEQLMI LEEMYRGGLR TPNASQIQQI TAHLAHYGRI 60 EGKNVFYWFQ NHKARDRQKL RRRLCMSHHL LSCAHYYAAA NAGQYHHQQQ LLGAGAVPPP 120 LLQHQQQQQQ YYSASCAGGG YDQHLLPTTV PASAYATAAG YAYPFAAVPA SRCADPSPPK 180 TPLSFHHQGG GIVGSPEYSL GRLGNFGVVD DTCRPSRYEQ QQQQQQLTAA TEDQAAPVTA 240 TTGLFCRPLK TLDLFPGAIK EEHRDVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040184 | 1e-111 | BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds. | |||
GenBank | KJ726946 | 1e-111 | KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164197.1 | 1e-170 | putative WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A3B5ZNN3 | 0.0 | A0A3B5ZNN3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_E50CDDF05.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-39 | WOX family protein |
Publications ? help Back to Top | |||
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