PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DL_23D036A85.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bZIP | ||||||||
Protein Properties | Length: 404aa MW: 42897.5 Da PI: 9.867 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 69.7 | 4.6e-22 | 265 | 327 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+e+kre+rkq+NRe+ArrsR+RK+ae+eeL++ v++L+aeN++Lk+e+ +l+k ++kl+ e+ Traes_1DL_23D036A85.1 265 EREVKREKRKQSNRESARRSRLRKQAETEELATQVESLTAENTSLKSEIGKLTKSSEKLRIEN 327 799*******************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 4.2E-28 | 23 | 114 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 5.9E-17 | 260 | 324 | No hit | No description |
Pfam | PF00170 | 9.5E-21 | 265 | 327 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.2E-21 | 265 | 329 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.162 | 267 | 330 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.44E-11 | 268 | 323 | No hit | No description |
CDD | cd14702 | 1.41E-21 | 270 | 318 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 272 | 287 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MCQNSLLMKT AYCKDRQAFS KGMAHDEAVA AQKTGKSGSP PKDQPAPSPY PDWSAMQAYY 60 SSGVMPPAYF APAMAAGHPP PPYMWGPQHM MPPPFGTPYA MYPHGGAYPH PLVPMMASPL 120 SVEPAKSANS KDKSSNKKLK EIDGSAVSTG SGNSKKTSSS GDYSGEGSSD VNDLKVSGTP 180 RKRSLDGGFD TEATVAARNK DVVASSPIIR NGAILSNQCF PAPVIKPSVT NVANSRAIGT 240 PVSPLPGVMG PIHTGISTEL SSKDEREVKR EKRKQSNRES ARRSRLRKQA ETEELATQVE 300 SLTAENTSLK SEIGKLTKSS EKLRIENSAL VVKLKGTAAP TSAEMPLDKT AVAAPSSSPR 360 VVENFLSMID DTSKSGVKNH MEHSEPKLRQ LLGSSATTDV VAAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 281 | 287 | RRSRLRK |
2 | 281 | 288 | RRSRLRKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00318 | DAP | Transfer from AT2G46270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT225464 | 0.0 | KT225464.1 Triticum aestivum GBF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151704.1 | 0.0 | common plant regulatory factor 1-like | ||||
Refseq | XP_020151705.1 | 0.0 | common plant regulatory factor 1-like | ||||
TrEMBL | A0A3B6A1S6 | 0.0 | A0A3B6A1S6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DL_23D036A85.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2776 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01120.1 | 2e-28 | G-box binding factor 2 |
Publications ? help Back to Top | |||
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