PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_D6C49C3BC.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 36782.6 Da PI: 6.5078 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.5e-53 | 6 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtd+elv +yLk++v++ k+el evi+ +d+yk+ePw+Lp k + +++ ew+fF++rd+ky++g+r+nrat++gyWkat Traes_1AL_D6C49C3BC.2 6 LPPGFRFHPTDDELVGYYLKRRVDNLKIEL-EVIPVIDLYKCEPWELPeKsFLPKRDLEWFFFVPRDRKYPNGSRTNRATTTGYWKAT 92 79****************************.99**************95334445667****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd++v + +g++ g++ktLvfykgrap ge+tdWvmheyrl Traes_1AL_D6C49C3BC.2 93 GKDRKVSCDGGAVCGVRKTLVFYKGRAPGGERTDWVMHEYRL 134 ****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.064 | 6 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-28 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MGTMTLPPGF RFHPTDDELV GYYLKRRVDN LKIELEVIPV IDLYKCEPWE LPEKSFLPKR 60 DLEWFFFVPR DRKYPNGSRT NRATTTGYWK ATGKDRKVSC DGGAVCGVRK TLVFYKGRAP 120 GGERTDWVMH EYRLCQDLLH GASNFIGAYA LCRVIKRTEA GLLHGDAAAK ARPGHRQMSK 180 VGSSSSLVTT DQQLGSLTPS PPRLDIVGNA FQLHSSPSPL YGGGGEVVSG MGTPLGFPQQ 240 DAAATFFIDG DFAGAGETTQ SHMPFFGDMG VVSDHELRWD TLPPCANSTF STTAAAGAAE 300 LWNPAAPNAA APMLCREASD DLAAFFSSLD ENNMVVY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-51 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-51 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-51 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-51 | 1 | 161 | 12 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-51 | 1 | 161 | 12 | 169 | NAC domain-containing protein 19 |
4dul_B | 6e-51 | 1 | 161 | 12 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368985 | 0.0 | AK368985.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2083F05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161029.1 | 0.0 | NAC domain-containing protein 86-like | ||||
TrEMBL | A0A446IXI8 | 0.0 | A0A446IXI8_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_D6C49C3BC.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6209 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17980.1 | 7e-82 | NAC domain containing protein 71 |
Publications ? help Back to Top | |||
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