PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g35400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | AP2 | ||||||||
Protein Properties | Length: 559aa MW: 61826.9 Da PI: 7.4657 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.5e-12 | 289 | 345 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g Tp7g35400 289 SQYRGVTRHRWTGRYEAHLWDnSFKkEGhSRKGRQ-GGYDMEEKAARAYDLAALKYWG 345 78*******************43334555446666.77******************98 PP | |||||||
2 | AP2 | 51 | 3.6e-16 | 388 | 439 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Tp7g35400 388 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 439 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 289 | 345 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.59E-18 | 289 | 352 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-14 | 289 | 355 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-12 | 290 | 353 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.99 | 290 | 353 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-20 | 290 | 359 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 291 | 302 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 388 | 439 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 388 | 448 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.18E-25 | 388 | 449 | No hit | No description |
PROSITE profile | PS51032 | 18.966 | 389 | 447 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-18 | 389 | 447 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-34 | 389 | 453 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 429 | 449 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MKSFCDNDDN NHSNTTNLLG FSLSSNMLKM GGGGGEALYS SSSSSAATSS SSVPPQLVVG 60 DNSSNYGVCY GSNSAAGEIY SQMSVMPLRS DGSLCLMEAL NRSSHSNHHH HTQVSSPKME 120 DFFGTHHNNT SQKEAMDLSL DSLFYNTTHQ PNNNTNFQEF FSFPQTRNHH EEETRNYEND 180 PGLTQGGGSF NVGVYGEFQQ SLSLSMSPGS QSSCITGSHH YQNQNHQSQN QTQNHHQISE 240 ALVETSVGFE TTTMAAAAKK KRGQEDVLVV GQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT 300 GRYEAHLWDN SFKKEGHSRK GRQGGYDMEE KAARAYDLAA LKYWGPSTHT NFSVENYQKE 360 IEDMKNMTRQ EYVAHLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF 420 GTQEEAAEAY DVAAIKFRGT NAVTNFDITR YDVDRIMSSN TLLSGELARR NSNSIVVRNN 480 NEETALNAVV DGGSNKEGSS PERVLSFPAI FALPQVGPKM FGANVVGNMS SWTANPNAEL 540 KTVSLTLPQM PVFAAWADS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g35400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ211970 | 0.0 | DQ211970.1 Brassica napus aintegumenta 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013593440.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 0.0 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A3P6FD85 | 0.0 | A0A3P6FD85_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g118740.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 0.0 | AP2 family protein |