PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g34390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bZIP | ||||||||
Protein Properties | Length: 316aa MW: 33942.3 Da PI: 6.5267 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 77.4 | 1.8e-24 | 221 | 283 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+e+L+++v++L++eN++L++el++l+ e++klk+e+ Tp7g34390 221 ERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLTNENQSLRDELQRLSGECEKLKTEN 283 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.2E-30 | 1 | 94 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Gene3D | G3DSA:1.20.5.170 | 2.4E-20 | 218 | 281 | No hit | No description |
Pfam | PF00170 | 1.7E-22 | 221 | 283 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 6.9E-23 | 221 | 285 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.633 | 223 | 286 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.67E-12 | 224 | 280 | No hit | No description |
CDD | cd14702 | 2.13E-23 | 226 | 276 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 228 | 243 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:0090342 | Biological Process | regulation of cell aging | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGTSEEKTPF KPSKPASSAQ DIPPTPYPDW SNSMQAYYGG GGTPNPFFPS PVGSPSPHPY 60 MWGAQHHMMP PYGTPVPYPA MYPPGAVYAH PGMPMPPASG PTNKETVKDQ APGKKSKGNL 120 KRKGEGAEKA PSGSGNDGVS QSDESVTAGS SDENDENANH QEQGSARKPS FGQMLADASS 180 QSNTTGEIQG SVPMKPVAPG TNLNIGMDLW SSQAGVAVKD ERELKRQKRK QSNRESARRS 240 RLRKQAECEQ LQQRVESLTN ENQSLRDELQ RLSGECEKLK TENNSIQDEL LRVHGPEAVA 300 NLEQSAAGSK DGEGTN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 237 | 243 | RRSRLRK |
2 | 237 | 244 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00039 | PBM | Transfer from AT4G36730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g34390 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X83922 | 0.0 | X83922.1 B.napus mRNA for G-Box binding factor 1A. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411967.1 | 0.0 | G-box-binding factor 1 | ||||
Swissprot | P42774 | 0.0 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A1J3DZ24 | 0.0 | A0A1J3DZ24_NOCCA; G-box-binding factor 1 | ||||
STRING | Bra011701.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7274 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.1 | 0.0 | G-box binding factor 1 |