 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Tp6g34620 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
| Family |
TCP |
| Protein Properties |
Length: 240aa MW: 24687.7 Da PI: 10.4572 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp6g34620 | genome | thellungiella | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 123.4 | 2.6e-38 | 27 | 106 | 2 | 82 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssa 82
a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s s+
Tp6g34620 27 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TASLSTSS 106
79**************************************************************99999777.22222222 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0042752 | Biological Process | regulation of circadian rhythm |
| GO:0043433 | Biological Process | negative regulation of sequence-specific DNA binding transcription factor activity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MANNDGAVTN GVIVEQTSAI NKGTLNAVKK PPSKDRHSKV DGRGRRIRMP IICAARVFQL 60
TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSPFTL GKRVVRAEEG 120
ESGAGGGGGL SVGPTMGTSL MSGGAGAGAG GFWAVPARSD FGQVWSFAAG APPEMLFTQQ 180
QQPATLFVRQ QQQASAAAAA MGEASAARVG NYLPGHHLNL LASLSGGTTG SGRREEEEPR
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF412074 | 0.0 | AF412074.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. |
| GenBank | AL392174 | 0.0 | AL392174.1 Arabidopsis thaliana DNA chromosome 5, BAC clone F8L15 (ESSA project). |
| GenBank | AY072620 | 0.0 | AY072620.1 Arabidopsis thaliana AT5g08330/F8L15_60 mRNA, complete cds. |
| GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
