PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp5g35790

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

FAR1

Protein Properties

Length: 700aa MW: 79480.7 Da PI: 6.5066

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp5g35790	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.5	9.3e-23	93	176	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ Tp5g35790 93 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCQAMIRLRLIELDRWKVDEVKLDHNHSFD 176 9*************************************998877.....8999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-20	93	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-26	296	389	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	579	618	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.0E-6	590	616	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.9E-5	593	620	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MIGGNSVYSP PDQSLSPNPS LCITSSEQLI VEEDGGQDLP IGDNPHLEND CDGLLDEIAS 60 ESNESGKCLM VAPPPPPPAT GMEFDSYDDA YSYYNSYARE LGFAIRVKSS WTKRNSKEKR 120 GAVLCCNCEG FKMVKEANSR RKETRTGCQA MIRLRLIELD RWKVDEVKLD HNHSFDPERA 180 HNSKSHKKTC GATKRKPEPP LDVQVRTIKL YRTPAIDTPN SSGETSDPAH DHFHSSSSRR 240 LELRGGFRVL QDFFFQAQLT NPNFLYSMDL GDDGSLRNVF WIEARARAAY THFGDILVFD 300 TTCLSNTYEL PLVAFVGINH HGDSILLGCG LVADRSCETY IWLFRAWLTC MLGRPPQTFV 360 TERCKSMQTA VSEVFPRAHH RLSLTHILQS IFQSVVGLQD SELFHVALNR VVYGFLKVEE 420 FEVAWEEMIT RFGLTNHETI RELFQDREQW APVYLKDTFL AGALSFRLGN PAAPSIFSGY 480 VHQHTSLREF LEGYESFLDK KYTSEALYDS ESSKSIPEIK TTHPYESQMA KVFTKEIFTR 540 FQEEVSAMSS CFGVAQVHSN GSTSSYVVKE REGEKVRDFE VIYETSGGAQ VRCFCVCGGF 600 SFSGYQCRHV LVLLSHNGLE EIPSQYILQR WRKDVKRLNV ADFGSGGVDI MNPVQWYEHL 660 HRRAMQVVEQ GMRSKEHCRV AWEAFKESVN RVHLVTEKPS

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MIGGNSVYSP PDQSLSPNPS LCITSSEQLI VEEDGGQDLP IGDNPHLEND CDGLLDEIAS  60
ESNESGKCLM VAPPPPPPAT GMEFDSYDDA YSYYNSYARE LGFAIRVKSS WTKRNSKEKR  120
GAVLCCNCEG FKMVKEANSR RKETRTGCQA MIRLRLIELD RWKVDEVKLD HNHSFDPERA  180
HNSKSHKKTC GATKRKPEPP LDVQVRTIKL YRTPAIDTPN SSGETSDPAH DHFHSSSSRR  240
LELRGGFRVL QDFFFQAQLT NPNFLYSMDL GDDGSLRNVF WIEARARAAY THFGDILVFD  300
TTCLSNTYEL PLVAFVGINH HGDSILLGCG LVADRSCETY IWLFRAWLTC MLGRPPQTFV  360
TERCKSMQTA VSEVFPRAHH RLSLTHILQS IFQSVVGLQD SELFHVALNR VVYGFLKVEE  420
FEVAWEEMIT RFGLTNHETI RELFQDREQW APVYLKDTFL AGALSFRLGN PAAPSIFSGY  480
VHQHTSLREF LEGYESFLDK KYTSEALYDS ESSKSIPEIK TTHPYESQMA KVFTKEIFTR  540
FQEEVSAMSS CFGVAQVHSN GSTSSYVVKE REGEKVRDFE VIYETSGGAQ VRCFCVCGGF  600
SFSGYQCRHV LVLLSHNGLE EIPSQYILQR WRKDVKRLNV ADFGSGGVDI MNPVQWYEHL  660
HRRAMQVVEQ GMRSKEHCRV AWEAFKESVN RVHLVTEKPS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp5g35790

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009104440.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	A0A1J3JD88	0.0	A0A1J3JD88_NOCCA; Protein FAR1-RELATED SEQUENCE 8
STRING	A0A087HJU8	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]