PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp5g35790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | FAR1 | ||||||||
Protein Properties | Length: 700aa MW: 79480.7 Da PI: 6.5066 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.5 | 9.3e-23 | 93 | 176 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + ++r+etrtgC+a++++++ + ++w+v++++l+HnH++ Tp5g35790 93 YYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-----SRRKETRTGCQAMIRLRLIELDRWKVDEVKLDHNHSFD 176 9***************************************998877.....8999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-20 | 93 | 176 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.8E-26 | 296 | 389 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.951 | 579 | 618 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 7.0E-6 | 590 | 616 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.9E-5 | 593 | 620 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MIGGNSVYSP PDQSLSPNPS LCITSSEQLI VEEDGGQDLP IGDNPHLEND CDGLLDEIAS 60 ESNESGKCLM VAPPPPPPAT GMEFDSYDDA YSYYNSYARE LGFAIRVKSS WTKRNSKEKR 120 GAVLCCNCEG FKMVKEANSR RKETRTGCQA MIRLRLIELD RWKVDEVKLD HNHSFDPERA 180 HNSKSHKKTC GATKRKPEPP LDVQVRTIKL YRTPAIDTPN SSGETSDPAH DHFHSSSSRR 240 LELRGGFRVL QDFFFQAQLT NPNFLYSMDL GDDGSLRNVF WIEARARAAY THFGDILVFD 300 TTCLSNTYEL PLVAFVGINH HGDSILLGCG LVADRSCETY IWLFRAWLTC MLGRPPQTFV 360 TERCKSMQTA VSEVFPRAHH RLSLTHILQS IFQSVVGLQD SELFHVALNR VVYGFLKVEE 420 FEVAWEEMIT RFGLTNHETI RELFQDREQW APVYLKDTFL AGALSFRLGN PAAPSIFSGY 480 VHQHTSLREF LEGYESFLDK KYTSEALYDS ESSKSIPEIK TTHPYESQMA KVFTKEIFTR 540 FQEEVSAMSS CFGVAQVHSN GSTSSYVVKE REGEKVRDFE VIYETSGGAQ VRCFCVCGGF 600 SFSGYQCRHV LVLLSHNGLE EIPSQYILQR WRKDVKRLNV ADFGSGGVDI MNPVQWYEHL 660 HRRAMQVVEQ GMRSKEHCRV AWEAFKESVN RVHLVTEKPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp5g35790 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009104440.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A1J3JD88 | 0.0 | A0A1J3JD88_NOCCA; Protein FAR1-RELATED SEQUENCE 8 | ||||
STRING | A0A087HJU8 | 0.0 | (Arabis alpina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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