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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 270aa MW: 29858.1 Da PI: 4.4816 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.1 | 1.4e-20 | 61 | 112 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+W+AeIrdps r r++lg+f taeeAa +++a+ kl+g+ Tp57577_TGAC_v2_mRNA6945 61 KKYRGVRQRP-WGKWAAEIRDPS----RgVRVWLGTFETAEEAAIVYDNAAIKLRGP 112 59********.**********84....36*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.90E-35 | 61 | 118 | No hit | No description |
PROSITE profile | PS51032 | 23.815 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-38 | 62 | 125 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 62 | 118 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-13 | 62 | 111 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-31 | 62 | 118 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-11 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXNRTN GGGGKGGKAR APVSRQVYTG 60 KKYRGVRQRP WGKWAAEIRD PSRGVRVWLG TFETAEEAAI VYDNAAIKLR GPDALTNFIT 120 PPSTCQLSSP DNEQPPQQLP LPVTNSGYIS GEEESQSQSQ SQSQSQSHNN NKSLFSPKSV 180 LHPCSSSEEV AESESLFSIP SDILFDFQDS SPANDAFNSF NTLPENIFYA DMDCSEHFDF 240 GLESLHTHKD GDFFQDIDDL FGSDALLAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-24 | 60 | 118 | 3 | 62 | ATERF1 |
3gcc_A | 1e-24 | 60 | 118 | 3 | 62 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6945 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR962124 | 1e-63 | CR962124.2 Medicago truncatula chromosome 5 clone mth2-44c15, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611024.1 | 2e-92 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | A0A2K3M2A0 | 1e-170 | A0A2K3M2A0_TRIPR; Ethylene-responsive transcription factor crf2-like protein | ||||
STRING | AES93982 | 8e-92 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-33 | cytokinin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6945 |