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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA6234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | bZIP | ||||||||
Protein Properties | Length: 163aa MW: 18967.5 Da PI: 8.0514 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 41.6 | 2.7e-13 | 31 | 89 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rkq+NRe+ArrsR RK++ ++ L +v+ L +eN + ++++ ++++ k ++e+ Tp57577_TGAC_v2_mRNA6234 31 RKRKRKQSNRESARRSRMRKQKHMDDLMVEVERLRNENNEIMTRMNMTTQHYLKIEAEN 89 6789********************************************99999988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-15 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.4E-10 | 28 | 81 | No hit | No description |
PROSITE profile | PS50217 | 10.887 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.3E-10 | 31 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.05E-11 | 31 | 83 | No hit | No description |
CDD | cd14702 | 6.12E-18 | 32 | 82 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MMATSSGNSS VSTKSQSYGS EEDLQVLMDQ RKRKRKQSNR ESARRSRMRK QKHMDDLMVE 60 VERLRNENNE IMTRMNMTTQ HYLKIEAENC VLSAQMVELN QRLQSLNDII NIINTPTTIT 120 NGVNYQNNDC FLTISDNCFM NQMNMSYLNQ QPIMASSDMF MW* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 30 | 35 | RKRKRK |
2 | 30 | 51 | RKRKRKQSNRESARRSRMRKQK |
3 | 43 | 50 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA6234 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013466147.1 | 1e-106 | bZIP transcription factor 11 | ||||
Swissprot | C0Z2L5 | 2e-44 | BZP44_ARATH; bZIP transcription factor 44 | ||||
TrEMBL | A0A072VF03 | 1e-104 | A0A072VF03_MEDTR; BZIP transcription factor bZIP124 | ||||
STRING | XP_004499193.1 | 5e-83 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF613 | 34 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 3e-34 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA6234 |
Publications ? help Back to Top | |||
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