PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5886
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 364aa    MW: 41087 Da    PI: 4.6805
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5886genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19116166155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ kl+g
  Tp57577_TGAC_v2_mRNA5886 116 KKFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 166
                               59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-33116173No hitNo description
PfamPF008474.7E-12117166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-30117174IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21117174IPR016177DNA-binding domain
PROSITE profilePS5103223.709117174IPR001471AP2/ERF domain
SMARTSM003802.2E-38117180IPR001471AP2/ERF domain
PRINTSPR003672.5E-10118129IPR001471AP2/ERF domain
PRINTSPR003672.5E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDTQQKQSIL CKYTEHHTVT KKIITTTKKN SNNNNNNTTI NPRVVRISVT DPDATDSSGD  60
ERETQPFFRN RTKRYINRIE IETTVKQTVN RKRPAGESSV KRPAKAAKVP IVNNGKKFRG  120
VRQRPWGKWA AEIRDPARRV RLWLGTFETA EEAAMVYDNA AIKLRGPDAL TNFGTPPQKE  180
IPVEPTTVKH EMKPEIKPEM KVVVEQETEA CGSGNSGYDS GEERCIPLSS PTSVLNFRSN  240
SGESQESEEK SEACEVFREC EGETNLFNET ASFFQSDMLC FDDVFNFETP EFPLLFEEEQ  300
NKMMFDDTTP FLFDEEDLSK SIVLADSLID FDKACFPSSS SSLCQVDDFF QDILLASDPL  360
VVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23115173362ATERF1
3gcc_A2e-23115173362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873RNRTKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5886
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602186.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A2K3L3060.0A0A2K3L306_TRIPR; Ethylene-responsive transcription factor crf4-like protein
STRINGAES724370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-52cytokinin response factor 4