PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5246
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 413aa    MW: 44407.1 Da    PI: 7.775
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5246genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.41e-20268330163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkre+rkq+NRe+ArrsR+RK+ae eeL+++v++L++eN  Lk+e++el ++++klk+e+
  Tp57577_TGAC_v2_mRNA5246 268 ERELKREKRKQSNRESARRSRLRKQAEAEELARRVDALTSENLLLKSEMNELAQNSEKLKMEN 330
                               89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.1E-34199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.1E-22133251No hitNo description
Gene3DG3DSA:1.20.5.1703.7E-14262327No hitNo description
PfamPF001706.4E-19268330IPR004827Basic-leucine zipper domain
SMARTSM003385.6E-17268332IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.806270333IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.69E-9271327No hitNo description
CDDcd147023.02E-18273321No hitNo description
PROSITE patternPS000360275290IPR004827Basic-leucine zipper domain
SuperFamilySSF1604594.32E-5315382No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGNSEDGKSI KIEKPSSPVT TDQINQTNQH NIHVYPDWAA MQAYYGQRVN IPPYFNSTVA  60
SGHAPHPYMW GPPQPMVHPY GPPYASFYPH GGVYTHPAVA VGPNSHGQGI PSSPAAGTPS  120
SIETPTKSSG NTDHGLMKKL KGFDGLAMSI GNGNAESAER GAENRLSRSV DTEGSSDGSD  180
GNTTGTNGTR KRSRDGTPTT TDSPVSKENA AFKKTLSVAP ASVAEKIVGP ILSSGMTTAL  240
ELRNPSTISA AAAQPCGVLP PEVWMQNERE LKREKRKQSN RESARRSRLR KQAEAEELAR  300
RVDALTSENL LLKSEMNELA QNSEKLKMEN ATLKEKLKNT QLGQTEEIIL NNIDNRATPV  360
STENLLSRVN NSNSDDRTAE EENGFCENKP NSGAKLHQLL DTNPRANAVA AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290RRSRLRK
2284291RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5246
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1374840.0BT137484.1 Medicago truncatula clone JCVI-FLMt-15O3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444711.10.0common plant regulatory factor 1
RefseqXP_024629677.10.0common plant regulatory factor 1
SwissprotQ990891e-132CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2K3NQ830.0A0A2K3NQ83_TRIPR; Common plant regulatory factor 1-like protein
STRINGXP_004510714.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-111G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]