PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4973
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 418aa    MW: 44944.8 Da    PI: 8.3931
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4973genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.54e-20271333163
                               XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               e+elkrerrkq+NRe+ArrsR+RK+ae eeL++kv++L ae  +Lk+e+++l + ++kl++e+
  Tp57577_TGAC_v2_mRNA4973 271 ERELKRERRKQSNRESARRSRLRKQAEAEELARKVESLNAESASLKSEINRLAESSEKLRMEN 333
                               89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-36198IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.8E-24131252No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-16265331No hitNo description
PfamPF001701.8E-18271333IPR004827Basic-leucine zipper domain
SMARTSM003381.9E-18271335IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.162273336IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-9274330No hitNo description
CDDcd147021.04E-19276324No hitNo description
PROSITE patternPS000360278293IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGTSEEEKST KTEKPSSPLT ADQTNNQANI HVYPDWAAMQ AYYGPRVAMP PYYNSPVPSG  60
HTPHPYMWGP PQPMMPPYGH PYAAMYPHGG VYTHPAVPIV THPHSQGISS SPVTGTPLSI  120
ETPPKSSGNT DQGLMKKLKG FDGLAMSIGN GHAESAEPGA ESKLSQSVDT DGSSDGSDSN  180
TSGANQTRRK RSREGTPTTD DGEGKTHTQG SQASKEIATS NKMMAVGPVV SSAMTTALEL  240
KNPSSVKSKT SPTSAPQPSA VLPPEAWMQN ERELKRERRK QSNRESARRS RLRKQAEAEE  300
LARKVESLNA ESASLKSEIN RLAESSEKLR MENAALKEKF KIAQLGQPKE IILSSIDSQR  360
ITPVSTENLL SRVNNNSGSN DRAMEDENSY CDNKPNSGAK LHQLLDTSPR ADAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287293RRSRLRK
2287294RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4973
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8639110.0JN863911.1 Medicago sativa bZIP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024626445.10.0common plant regulatory factor 1 isoform X1
RefseqXP_024626446.10.0common plant regulatory factor 1 isoform X1
RefseqXP_024626447.10.0common plant regulatory factor 1 isoform X1
RefseqXP_024626448.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990891e-137CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2K3PK460.0A0A2K3PK46_TRIPR; Common plant regulatory factor 1-like protein (Fragment)
STRINGAES827470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-97G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]