 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Tp57577_TGAC_v2_mRNA4392 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
| Family |
AP2 |
| Protein Properties |
Length: 421aa MW: 48972.8 Da PI: 7.8919 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Tp57577_TGAC_v2_mRNA4392 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 22.3 | 3.4e-07 | 106 | 155 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55
+++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g
Tp57577_TGAC_v2_mRNA4392 106 RHRWTGRFEAHLWDkLSWNItqKKKGKQ-GAYDEEESAARAYDLAALKYWG 155
799***********88887784446666.9*******************98 PP
|
| 2 | AP2 | 52.2 | 1.5e-16 | 198 | 249 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g
Tp57577_TGAC_v2_mRNA4392 198 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 249
89****99**********99966...3.6*************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MAMLIENEVM CMRKSMEEKD VKGARSVKRK RREHAIGPII DDDDNHNKKM IKQHIGENST 60
TNTTKRSSRF RGVSRYQLFL FWYKGININY YCVYFSNKIL ELYTNRHRWT GRFEAHLWDK 120
LSWNITQKKK GKQGAYDEEE SAARAYDLAA LKYWGTSTFT NFQTSDYEKE IEIMKTMTKE 180
EYLATLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY 240
DIAAIEYRGI HAVTNFELSS YIKWLKPESD KEEKHESQAL PNESQTMESP NNSTLLQESK 300
LLALQKSFFI PNCINSNEKQ DSSSSFENKN YHFLSNKSTS PTALSLLLRS SLFRELLEKN 360
SNVSEDEVTS EHHQQQQQIA SDDELCGTFY DGIDNISFDF DPNICNIELQ ERDLNSIFCT 420
*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC137994 | 1e-154 | AC137994.19 Medicago truncatula clone mth2-23f15, complete sequence. |
