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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA41450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 179aa MW: 19398.4 Da PI: 7.9248 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32 | 2.1e-10 | 36 | 59 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G+ CkF H++ Tp57577_TGAC_v2_mRNA41450 36 QPCTHYTQRGICKFGSACKFDHPM 59 59********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.0E-5 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.779 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 36 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-8 | 36 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:1.10.418.10 | 2.0E-11 | 108 | 173 | IPR001715 | Calponin homology domain |
SuperFamily | SSF47576 | 6.94E-20 | 113 | 176 | IPR001715 | Calponin homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MLPHIISCHY FYSSLIFLAF ISLLVQSFVF GLQGAQPCTH YTQRGICKFG SACKFDHPMG 60 SLSYSPSASS LADMPVAPYP AHVNLQTRAM AKDGGSKSSS FLKTATTTVH HAINESEKAS 120 YVAHINSYLA EDKFLKQFLP LDPATNALFD LAKDGVLLCK LINVAVPGTI DERYAIAF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1pxy_A | 1e-23 | 115 | 173 | 6 | 64 | fimbrin-like protein |
1pxy_B | 1e-23 | 115 | 173 | 6 | 64 | fimbrin-like protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Cross-links actin filaments (F-actin) in a calcium independent manner. Induces the formation of actin bundles. Stabilizes and prevents F-actin depolymerization mediated by latrunculin B (LatB). {ECO:0000269|PubMed:21098731}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA41450 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU424491 | 2e-79 | CU424491.2 Medicago truncatula chromosome 5 clone mth2-61f13, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020234342.1 | 4e-49 | fimbrin-5 | ||||
Swissprot | Q9FKI0 | 3e-42 | FIMB5_ARATH; Fimbrin-5 | ||||
TrEMBL | A0A2Z6NIM6 | 3e-54 | A0A2Z6NIM6_TRISU; Uncharacterized protein | ||||
STRING | XP_004491610.1 | 3e-47 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 3e-12 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA41450 |
Publications ? help Back to Top | |||
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