PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA39656

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

WOX

Protein Properties

Length: 268aa MW: 30997.5 Da PI: 8.1864

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA39656	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.2e-21	29	89	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ ++psae+++++A++l +++ ++V++WFqN++a+e++ Tp57577_TGAC_v2_mRNA39656 29 SSRWSPTPVQLLVLEELYRQgMKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 89 58***************99************************************97 PP
2	Wus_type_Homeobox	114	7.4e-37	28	91	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Tp57577_TGAC_v2_mRNA39656 28 QSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 91 689***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-13	23	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.985	25	90	IPR001356	Homeobox domain
SMART	SM00389	1.6E-7	27	94	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-19	30	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-9	30	89	IPR009057	Homeodomain-like
CDD	cd00086	2.60E-4	31	85	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MCFVYNIYIY STAHVAEQGR SNNMQPQQSS RWSPTPVQLL VLEELYRQGM KTPSAEQIQQ 60 IASQLRQFGK IEGKNVFYWF QNHKARERQK RRRREMEETT GSSNEDKKEK EKYLMQNSEK 120 QENAGLKETG SGVKETKKWG TTSNFSEQAE DIAEKGSIQV LRKNIAAERQ RKCQNIEIPY 180 YFTPFTKTSS VAAANRTCSN NNTPHPNYEE QNADYPRTLD LFPIKEDEQD GICLSERKSL 240 FCVNASSMDT HEITSSNQFF EFLPLRN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA39656

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636449.1	1e-132	WUSCHEL-related homeobox 1
TrEMBL	A0A2K3NSB5	0.0	A0A2K3NSB5_TRIPR; WUSCHEL-related homeobox 1-like protein
STRING	XP_004505406.1	1e-98	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15154	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	1e-27	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA39656