PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3942
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 342aa    MW: 38534.7 Da    PI: 7.2611
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3942genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-06183202120
                               EEETTTTEEESSHHHHHHHH CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                               ++Cp C+k+F+r  n++ H+
  Tp57577_TGAC_v2_mRNA3942 183 FSCPVCSKTFNRYNNMQMHM 202
                               89*****************9 PP
2zf-C2H212.50.00045267289123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               + C +C+k F  + + ++H +++
  Tp57577_TGAC_v2_mRNA3942 267 FMCRKCSKAFAVRGDWRTHEKNC 289
                               89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-5179205No hitNo description
Gene3DG3DSA:3.30.160.602.3E-6183202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.242183210IPR007087Zinc finger, C2H2
SMARTSM003550.054183205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SMARTSM00355220230262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.43E-6249287No hitNo description
Gene3DG3DSA:3.30.160.604.4E-5254287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035573267287IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MANNPYSNLF SSSSSTFFKF NHILPSSNPS PHHHNNPFLH XINNNHSFFH YTSPPSPPLR  60
EELPLLSLIP AKQEQEYEDQ QSHQDIQDQY LPCTAMDLEE RGEDGTSSSS TTVTVALHIG  120
LPNPSAAEMA SLLSSSNSSD ITADNNKEHG EDSCSGFMVN NRLNKGQYWI PTPSQILIGP  180
TQFSCPVCSK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY CCAQGCRNNI  240
DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCSKAFAVRG DWRTHEKNCG KLWYCICGSD  300
FKHKRSLKDH IKAFGNGHAA FGCDGFEEED EPASEVEQDN E*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1433411e-174AC143341.8 Medicago truncatula clone mth2-7a11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625805.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-137ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K3NHH70.0A0A2K3NHH7_TRIPR; Protein TRANPARENT TESTA 1-like (Fragment)
STRINGAES813960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-129C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]