PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA39255 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 195aa MW: 22410.7 Da PI: 8.2175 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 7.7e-27 | 20 | 70 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie +snrqvtfskR+ngilKKA+E+S+LCd +v++i+ +++gk++ey+s Tp57577_TGAC_v2_mRNA39255 20 KRIEKSSNRQVTFSKRKNGILKKAKEISILCDSQVSLILSGESGKIHEYIS 70 79***********************************************86 PP | |||||||
2 | K-box | 71.1 | 3.4e-24 | 82 | 177 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 yq+ sgk l++a++esl++e++++kke+e+++ ++Rhl+Ge+++sL++keL+ Le++Le++l+ + +kK+e++++ ++ e Tp57577_TGAC_v2_mRNA39255 82 YQRDSGKTLWDAEHESLSNEIDRIKKENESMEIQLRHLKGENITSLKFKELMDLESALENGLTCVGDKKMEVYRMLKRNGEILE 165 78889999****************************************************************998777777777 PP K-box 85 kelqeenkaLrk 96 ++++e L++ Tp57577_TGAC_v2_mRNA39255 166 EQNKELDLLLQQ 177 777776666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.179 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.4E-34 | 12 | 71 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.81E-35 | 13 | 91 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-32 | 13 | 107 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-25 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-21 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-25 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-25 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-18 | 93 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.633 | 95 | 181 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQSQKQEKKK KMGRGKIEIK RIEKSSNRQV TFSKRKNGIL KKAKEISILC DSQVSLILSG 60 ESGKIHEYIS PSTTLIDVLD RYQRDSGKTL WDAEHESLSN EIDRIKKENE SMEIQLRHLK 120 GENITSLKFK ELMDLESALE NGLTCVGDKK MEVYRMLKRN GEILEEQNKE LDLLLQQHMA 180 VEDVGNMHDA SDYK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-17 | 12 | 102 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 2e-17 | 12 | 102 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 2e-17 | 12 | 102 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 2e-17 | 12 | 102 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA39255 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013461314.2 | 1e-103 | floral homeotic protein PMADS 2 | ||||
Swissprot | Q0HA25 | 8e-81 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A2K3LLL8 | 1e-129 | A0A2K3LLL8_TRIPR; PISTILLATA protein | ||||
STRING | GLYMA06G12380.1 | 1e-101 | (Glycine max) | ||||
STRING | XP_007137476.1 | 1e-101 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4355 | 32 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 5e-57 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA39255 |
Publications ? help Back to Top | |||
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