PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39026
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 350aa    MW: 39181.6 Da    PI: 7.3087
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39026genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083149171123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C+++F++   L  H  +H
  Tp57577_TGAC_v2_mRNA39026 149 YECKTCNRTFPSFQALGGHRASH 171
                                99**********99999998887 PP
2zf-C2H2130.00031233255123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  F++   L  H+r+H
  Tp57577_TGAC_v2_mRNA39026 233 HECSICGSEFTSGQALGGHMRRH 255
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.3E-13148173IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8148171No hitNo description
PROSITE profilePS5015710.637149176IPR007087Zinc finger, C2H2
SMARTSM003550.052149171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
SuperFamilySSF576671.03E-8228255No hitNo description
PfamPF139128.4E-12232257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.743233255IPR007087Zinc finger, C2H2
SMARTSM003550.019233255IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
LNLNNFLWPL GITPTPTSSK AKEPKGLGHN LLYLFPSLLI LXXXXXXXXX XXREDCNNGN  60
DVVVNNNINN NNNSSPTTSY VAEKQEDNIL DEEYDMANCL ILLAQGQSRD SSKNTDEYDG  120
GMMNYTKYSS RKFMEAATLD SGRAGYYVYE CKTCNRTFPS FQALGGHRAS HKKPKALAIA  180
QERKQLFDDD QDFQFKTNHK SISLQLNNNG KGNLYGGNNN SNNNNNNNKS KVHECSICGS  240
EFTSGQALGG HMRRHRAPVG TTAPANTTLS LTPMALEHDE DQPRKKRNVL SLDLDLNLPA  300
PEDEHRESKF AFASKQQQQH GQKQQQQQQQ QQQQTNLVFS SPALVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1458993e-86BT145899.1 Medicago truncatula clone JCVI-FLMt-14I9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469274.11e-155zinc finger protein ZAT5
TrEMBLA0A2Z6M4Y71e-163A0A2Z6M4Y7_TRISU; Uncharacterized protein
STRINGGLYMA20G33480.11e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-63C2H2 family protein