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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA38464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 21235.2 Da PI: 9.5984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.2 | 2.7e-15 | 17 | 59 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 + +g+Wv+eIr+p +r++lg+f taeeAaka+++a+ + g Tp57577_TGAC_v2_mRNA38464 17 RHWGSWVSEIRHP-----LlkRRVWLGTFETAEEAAKAYDEAAILMSG 59 45**********8.....334*********************987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 18.439 | 2 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-6 | 11 | 22 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-17 | 15 | 69 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.42E-29 | 16 | 69 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-27 | 16 | 67 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-30 | 16 | 73 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-8 | 17 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-6 | 33 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
LIHRDFVKFT VNSNMQRHWG SWVSEIRHPL LKRRVWLGTF ETAEEAAKAY DEAAILMSGR 60 NAKTNFPINM ENKINSISTS SSTSSKAFSA VLNAKLRKCC KFPSPSLTCL RLDTKNSHFG 120 VWQKGAGPHS ESNWIMMVEL ERKKSDSDSE FSSKAEKVVK AEELSKNGLD EEQKIALQMI 180 EELLNRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-11 | 16 | 74 | 20 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA38464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122167 | 1e-150 | AC122167.8 Medicago truncatula clone mth1-10d10, complete sequence. | |||
GenBank | AC149206 | 1e-150 | AC149206.2 Medicago truncatula chromosome 2 clone mte1-49n15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597892.1 | 9e-92 | ethylene-responsive transcription factor WIN1 | ||||
Swissprot | Q9XI33 | 1e-66 | WIN1_ARATH; Ethylene-responsive transcription factor WIN1 | ||||
TrEMBL | A0A2Z6M5X9 | 1e-110 | A0A2Z6M5X9_TRISU; Uncharacterized protein | ||||
STRING | AES68143 | 3e-91 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15360.1 | 2e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA38464 |