PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA37970
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 306aa    MW: 33648.1 Da    PI: 6.9404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA37970genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007125147123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C+++F++   L  H  +H
  Tp57577_TGAC_v2_mRNA37970 125 YECKTCNRTFPSFQALGGHRASH 147
                                99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-7124147No hitNo description
PfamPF139125.7E-13125149IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.408125152IPR007087Zinc finger, C2H2
SMARTSM003550.052125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.43E-7213238No hitNo description
PROSITE profilePS501579.328218271IPR007087Zinc finger, C2H2
PfamPF139128.0E-9218238IPR007087Zinc finger, C2H2
SMARTSM0035535218238IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGELVMEEQK LMDFSKKDAT HIAKGKRTKR LRLLSPCGVV STSITSSEEN GYFDDEIEDD  60
DEEEDMANCL ILLAQGGNHK QHDDDDDDDD RGDNRREKGS NGNKKIAQIV TAGATATSKA  120
GLYIYECKTC NRTFPSFQAL GGHRASHKKP KIMAEEKKEK LPSSPPSSIS SHDSQSVKLI  180
ANHDELEEAE KPRGGPTISF LMGNQGLKAI NGNKGKIHEC SICGSEFTSG QALGGHMRXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXSR RGSPGIKVSV SGYTKIYGDV CCSGFARVWQ  300
HHNHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA37970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606327.19e-85zinc finger protein ZAT5
TrEMBLA0A2K3MNC91e-139A0A2K3MNC9_TRIPR; Zinc finger protein ZAT5-like
STRINGAES885244e-84(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.14e-30C2H2 family protein