PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3499
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 323aa    MW: 36886.9 Da    PI: 6.1865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3499genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-18103153155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               ++y+GVr+++ +g+W AeIrdp+   +r r +lg++ taeeAa  +++a+ +++g
  Tp57577_TGAC_v2_mRNA3499 103 KKYRGVRQRP-WGKWSAEIRDPK---MRVRRWLGTYNTAEEAAMEYDKAAIEIRG 153
                               59********.**********93...34999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.81E-32103160No hitNo description
PfamPF008472.0E-11104153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-28104161IPR001471AP2/ERF domain
PROSITE profilePS5103223.024104161IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-20104161IPR016177DNA-binding domain
SMARTSM003801.2E-33104167IPR001471AP2/ERF domain
PRINTSPR003671.8E-9105116IPR001471AP2/ERF domain
PRINTSPR003671.8E-9127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSPPSNNNKH THHHYTQTKL INNSMNHLYP KTVRILLTDN DVTDSSSDDE HHVQPHLRRV  60
KTFVKQITIQ KQNNNNIIKK KPNRLKSKKT PATQRRPVIY SGKKYRGVRQ RPWGKWSAEI  120
RDPKMRVRRW LGTYNTAEEA AMEYDKAAIE IRGKDAVTNF IQPIGKKILN SDEECFSNNV  180
VSATSVLNQC STCSSEGGES VIVNDNVVVD NVVVHVPTND SNECSSVSGN LFVKDDNKFK  240
FESVFPIFSD TLFDEFGRND DLFDNEVELE NMFLVPDDDD FNGNFVDTSN QSLNLDSTDW  300
NRDYTNFKDI EDFFGSDHVT VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21102160362ATERF1
3gcc_A3e-21102160362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3499
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013447158.11e-113ethylene-responsive transcription factor CRF1
TrEMBLA0A2K3MX930.0A0A2K3MX93_TRIPR; Ethylene-responsive transcription factor crf2-like protein
STRINGXP_004503833.13e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-32cytokinin response factor 4