PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3438
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 32753.4 Da    PI: 8.281
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3438genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.55.6e-31959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  Tp57577_TGAC_v2_mRNA3438  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                              79***********************************************86 PP
2K-box15.19.7e-0775112138
                     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl 38 
                               y++++ +s++++ + +++ e+++Lk++i+ Lqr+ R +
  Tp57577_TGAC_v2_mRNA3438  75 YAERQLVSNDSESQGNWTIEYTRLKAKIDLLQRNYRYM 112
                               66788888899999********************9977 PP
3K-box83.93.4e-2814420935100
                     K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                               +Rh++GedL+s+slkeLq+LeqqL+++lk iR+++n+l++e+i+elqkkek +qe+n++L kk++e
  Tp57577_TGAC_v2_mRNA3438 144 NRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKE 209
                               5**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.394161IPR002100Transcription factor, MADS-box
SMARTSM004327.7E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-34292IPR002100Transcription factor, MADS-box
CDDcd002651.04E-42279No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.45288219IPR002487Transcription factor, K-box
PfamPF014862.0E-23143207IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYSYAERQL VSNDSESQGN WTIEYTRLKA KIDLLQRNYR YMLIFIIIVY  120
FVVDQFLTFI TSLTEFYDTD PLYNRHYMGE DLGSMSLKEL QSLEQQLDTA LKLIRTRRNQ  180
LMYESISELQ KKEKVIQEQN NMLAKKIKEK EKFAAQQQQA QWENPNHHGV NPNYLLQQQH  240
PSLNMGGNYR EDQAQEMGRN ELDLTLEPLY TCHLGCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4617401e-165AF461740.1 Pisum sativum MADS-box transcription factor MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628742.11e-152truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-123AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLG7LGW91e-151G7LGW9_MEDTR; MADS-box transcription factor
STRINGAET032181e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]