![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA32746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 352aa MW: 39136.4 Da PI: 5.0599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 159 | 208 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Tp57577_TGAC_v2_mRNA32746 159 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYRLRG 208 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.26E-34 | 158 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-32 | 159 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-23 | 159 | 216 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.1E-37 | 159 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.077 | 159 | 216 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-14 | 160 | 208 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 160 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-11 | 182 | 198 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MSSRMDFFNN SQDPLNGELM EVLEPFMKSS STTTPTPSSS SLPSTSSPFY SSTPTSSFSP 60 SQPNFYTENG YCSSMMTYQF PSSGSSNSSN SQNNFIGFEQ PQPNSVLGLN NLTTSQINQI 120 QAQIQFQAQQ QNNNNNLSFL GPKPISMKQP GIPPKPTKLY RGVRQRHWGK WVAEIRLPKN 180 RTRLWLGTFD TAEEAALAYD RAAYRLRGDF ARLNFPNMKD QQGLFGEFKV LHSSIDAKLD 240 AICESLGDVN KQGKIEKSVR GSKKDLKKQV QVQVQPLDVV ENNDDNNNKV VVVEGSGSLS 300 SPEGSDDSSP LSDLTFADFA EPQWENGSEQ FNLHKFPSYE IDWDSLGKMM D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 158 | 216 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA32746 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP016155 | 0.0 | FP016155.2 Medicago truncatula chromosome 5 clone mte1-16i20, COMPLETE SEQUENCE. | |||
GenBank | FP102213 | 0.0 | FP102213.2 Medicago truncatula chromosome 5 clone mtrs-161b8, COMPLETE SEQUENCE. | |||
GenBank | JN595891 | 0.0 | JN595891.1 Medicago truncatula putative AP2/EREBP transcription factor (WXP1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012575266.1 | 1e-167 | ethylene-responsive transcription factor RAP2-4-like | ||||
Swissprot | Q8H1E4 | 5e-85 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A1S3EJZ4 | 1e-166 | A0A1S3EJZ4_CICAR; ethylene-responsive transcription factor RAP2-4-like | ||||
STRING | XP_004514265.1 | 1e-155 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-50 | related to AP2 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA32746 |
Publications ? help Back to Top | |||
---|---|---|---|
|