PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA31592
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 320aa    MW: 37345.1 Da    PI: 9.0242
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA31592genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.6e-284999151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien+snrqvt+skR+ngilKKA+E+ vLCda+v++iif+ +gk+++y+s
  Tp57577_TGAC_v2_mRNA31592 49 KRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYIS 99
                               79***********************************************86 PP
2K-box74.53e-25111179169
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                y+k+sgk+l++ak+e+l++e+++Lkke++ +q e+Rhl+G+d++sL++keL++Le++Le++l +iR+k+
  Tp57577_TGAC_v2_mRNA31592 111 YHKTSGKRLWDAKHENLNNEIERLKKENDGMQVELRHLKGDDINSLNYKELMNLEDALENGLLTIRQKQ 179
                                7999***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.72141101IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-3841100IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-3442136IPR002100Transcription factor, MADS-box
CDDcd002653.59E-3942120No hitNo description
PRINTSPR004044.5E-274363IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004397IPR002100Transcription factor, MADS-box
PfamPF003191.3E-215097IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-276378IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-277899IPR002100Transcription factor, MADS-box
PfamPF014863.2E-14122187IPR002487Transcription factor, K-box
PROSITE profilePS5129713.375124230IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MFHFCCFHFY LTLPSSNSIP SPSTQLNLRE RSRERERERE MGRGKIEIKR IENSSNRQVT  60
YSKRKNGILK KAKEITVLCD AQVSLIIFAA SGKMHDYISP SSTLIDILER YHKTSGKRLW  120
DAKHENLNNE IERLKKENDG MQVELRHLKG DDINSLNYKE LMNLEDALEN GLLTIRQKQV  180
GNFSTITTLL LGNYTGWSRE TYAWISNYKG KILEEENREL NFILQQQQRM EGGREMDNDH  240
FDESGXXXXX XXXXXXXXXX XXXHFPFVFN LCSQIFMKGS RKFAAASLFN FVSNQFKTIG  300
ILIIFVHVKT FYNYIYVDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-1641140195MEF2C
5f28_B6e-1641140195MEF2C
5f28_C6e-1641140195MEF2C
5f28_D6e-1641140195MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12838RERSRERERER
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA31592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4034691e-143FJ403469.1 Medicago truncatula NGL9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498359.21e-101floral homeotic protein PMADS 2-like
SwissprotQ0HA252e-82MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLA0A1S2Y4D11e-100A0A1S2Y4D1_CICAR; floral homeotic protein PMADS 2-like
STRINGXP_004498359.11e-107(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-66MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]