PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Dof

Protein Properties

Length: 215aa MW: 23375.6 Da PI: 9.4614

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA31365	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119	1.8e-37	27	87	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPryfCk+CrryWt+GG+lr++PvGgg rkn k+s Tp57577_TGAC_v2_mRNA31365 27 EQENLPCPRCDSTNTKFCYYNNYNYSQPRYFCKGCRRYWTQGGTLRDIPVGGGNRKNAKRS 87 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	24	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-32	29	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSSSDSGESR RSTKPQNRPG PGAPAPEQEN LPCPRCDSTN TKFCYYNNYN YSQPRYFCKG 60 CRRYWTQGGT LRDIPVGGGN RKNAKRSRTQ HIAVTSSSSS SAVTSAPEHH HYQSMTPISA 120 VQGGSFPYGG NVDDEGKQNT SVSGSFTSLL NNSNTQGNFL ALGGFGFGLG QGLEEMSFGI 180 GRSGWGFPGX XXXXXXXXWW CASCVFKLMA VRRW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA31365

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013446454.1	2e-86	dof zinc finger protein DOF3.4
Swissprot	Q39088	6e-40	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2K3N400	1e-135	A0A2K3N400_TRIPR; Dof zinc finger protein
STRING	XP_004509185.1	6e-83	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-38	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA31365

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]