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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 396aa MW: 45155.9 Da PI: 7.0585 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.6e-05 | 232 | 251 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Tp57577_TGAC_v2_mRNA30950 232 FSCPVCFKTFNRYNNMQMHM 251 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 316 | 338 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Tp57577_TGAC_v2_mRNA30950 316 FMCRKCGKAFAVRGDWRTHEKNC 338 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.64 | 232 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.8E-6 | 232 | 251 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.93E-6 | 298 | 336 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 312 | 336 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 49 | 316 | 336 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.808 | 316 | 336 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MADPYSNFFS SNFFQFNNNN NSTHHFPSSN PSPHHHHPNY LHNFINHTTF NNTNTNNTNT 60 FFHYHHHLHH LQSTPSSSYS SSSPSSPPLK EALPLLSLIP TKQEEYDVLE QHHHLHQIHH 120 DETCTSMEVE DCRYNDNNNK VEKKDDDDDE SVTVALHIGL PNPSAAEIAT MMMSSSSSEM 180 MNNERDNQLL QGDVISEDSC SAGLLSSNRS QINKGQYWIP TPSQILIGPT QFSCPVCFKT 240 FNRYNNMQMH MWGHGSQYRK GPESLRGTQP TGMLRLPCYC CSPGCRNNID HPRAKPLKDF 300 RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD WRTHEKNCGK LWYCLCGSDF KHKRSLKDHI 360 RAFGSGHAAY GINGFEEEDE PASEVEQDND STQTQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30950 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024638802.1 | 0.0 | zinc finger protein WIP2-like | ||||
Swissprot | Q9SVY1 | 1e-143 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A396JLH8 | 0.0 | A0A396JLH8_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | XP_004513647.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-137 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30950 |
Publications ? help Back to Top | |||
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