PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29793
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 198aa    MW: 22656 Da    PI: 9.844
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29793genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.5e-302575151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien+snrqvt+skR+ngilKKA+E+SvLCda+v++i+f+ +gk++ey+s
  Tp57577_TGAC_v2_mRNA29793 25 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLILFGASGKMHEYIS 75
                               79***********************************************86 PP
2K-box898.9e-3087184198
                      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                                yq++sgk l++ak+e+ ++e++++kke++++q e+Rhl+Ged++sL++keL++Le++Le++l+ +R+kK+e+ ++  ++++  e
  Tp57577_TGAC_v2_mRNA29793  87 YQRASGKTLWDAKHENISNEIDRIKKENDSMQIELRHLKGEDITSLNYKELMSLEEALENGLTGVRDKKTEVHRMYKRNSKILE 170
                                78999******************************************************************************* PP

                      K-box  85 kelqeenkaLrkkl 98 
                                +e++e n  L++ +
  Tp57577_TGAC_v2_mRNA29793 171 DENKELNFLLQQHM 184
                                ********999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-381776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.6511777IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-3518112IPR002100Transcription factor, MADS-box
CDDcd002652.10E-381896No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-281939IPR002100Transcription factor, MADS-box
PfamPF003197.0E-232673IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-283954IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-285475IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2098177IPR002487Transcription factor, K-box
PROSITE profilePS5129714.591100186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MISPIPSSNT NKEKKKMGRG KIEIKRIENS SNRQVTYSKR KNGILKKAKE ISVLCDAQVS  60
LILFGASGKM HEYISPSTTL IDVLDRYQRA SGKTLWDAKH ENISNEIDRI KKENDSMQIE  120
LRHLKGEDIT SLNYKELMSL EEALENGLTG VRDKKTEVHR MYKRNSKILE DENKELNFLL  180
QQHMALEGVG NMHGQWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-1817107183MEF2 CHIMERA
6bz1_B1e-1817107183MEF2 CHIMERA
6bz1_C1e-1817107183MEF2 CHIMERA
6bz1_D1e-1817107183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29793
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8424910.0AY842491.1 Pisum sativum MADS box transcription factor PEAM1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461314.21e-126floral homeotic protein PMADS 2
SwissprotQ0HA252e-90MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLQ5MAR01e-125Q5MAR0_PEA; MADS box transcription factor PEAM1
STRINGXP_004502537.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.13e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]