PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29432
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 362aa    MW: 41652.2 Da    PI: 8.5356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29432genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012176192117
                                EEETTTTEEESSHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                                ++C+ C+k+F+r  +Lk
  Tp57577_TGAC_v2_mRNA29432 176 FSCHVCSKTFTRYNHLK 192
                                89************997 PP
2zf-C2H215.83.9e-05287308122
                                EEETTTTEEESSHHHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                y C +CgksFs k + k+H + 
  Tp57577_TGAC_v2_mRNA29432 287 YLCRKCGKSFSVKGDWKSHEKD 308
                                56*****************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-4176193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-5268307No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5285306IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.954287307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTDPQSIFFD EWFNFMHLHP NHNQYSSSST QQTNNMFDIQ SHNQPSSSSL TINPPSPPLR  60
EALPLINKLS LINHHQQQQN EPSNTTIEQE EYKRVLERHG DDDVGDESVT LSLQIGLPRM  120
NSSSSSNFGS RMVSNCIEMA ENEAPNMIYE NPLDKLNKVQ YWIPTPSQIL IGLTQFSCHV  180
CSKTFTRYNH LKMFIIRKTE LNFQLFQSTL LLYRXXXXXM HMWGHGPQYR IVADSLKGTQ  240
PTAMLRLPCF CCVQGCKYNI DHLRAKHFKD FRSLQTHYKR MHCIKPYLCR KCGKSFSVKG  300
DWKSHEKDCG KIWSCLCGLD FKNKKSIKHH LKAFGYGHGA FGFDCLHEED AAGSTKLNVK  360
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510958.11e-151zinc finger protein WIP2-like
RefseqXP_004510959.11e-151zinc finger protein WIP2-like
TrEMBLA0A1S2YWC01e-150A0A1S2YWC0_CICAR; zinc finger protein WIP2-like
STRINGXP_004510958.11e-151(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-88C2H2 family protein