PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29242
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 299aa    MW: 33179.9 Da    PI: 6.3494
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29242genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.3e-31142199258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                                +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+ver+++dp+++++tY+geH h
  Tp57577_TGAC_v2_mRNA29242 142 SDIWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERKKSDPTMFIVTYTGEHSH 199
                                79*************************998***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-31130202IPR003657WRKY domain
PROSITE profilePS5081133.327136202IPR003657WRKY domain
SuperFamilySSF1182906.41E-26138201IPR003657WRKY domain
SMARTSM007741.6E-36141201IPR003657WRKY domain
PfamPF031061.7E-26143199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEADWDLYAV IRPYTTITSS SSSTTTTTTI ATPSTPSSSG FETSTSCNFF SLYPAEQSIQ  60
VLPLETKSSI EELHDLCKPF FLKPQPLSSN SFSYSSPSPK SPHILQPKQH HHHAVSATTP  120
RSKRRKIQHK KVCEVKAENL SSDIWAWRKY GQKPIKGSPY PRGYYRCSST KGCPARKQVE  180
RKKSDPTMFI VTYTGEHSHL APTHRNSLAG STRQKPLSPK TITAEDSSQL FAKQVSPPIS  240
GAEEETGTPL STKSDSKEDL EDLMNDDDDV ENEFELSDMV VSDDFFEGLD ELEGFTSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-19130203680Disease resistance protein RRS1
5w3x_D3e-19130203680Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29242
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336872.11e-113WRKY transcription factor 22-like
TrEMBLA0A2Z6MSC51e-122A0A2Z6MSC5_TRISU; Uncharacterized protein (Fragment)
STRINGXP_004510691.11e-111(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.17e-64WRKY family protein