PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27926
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 322aa    MW: 36858.1 Da    PI: 6.0176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27926genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19125174255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                +++GVr+++ +grW+AeIrdp     r  +r +lg+f+taeeAa  +++a+  ++g
  Tp57577_TGAC_v2_mRNA27926 125 KFRGVRRRP-WGRWAAEIRDP-----RlrRRKWLGTFDTAEEAALVYDRAAIDYRG 174
                                89*******.**********9.....445***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.57E-31124180No hitNo description
SuperFamilySSF541719.81E-20125181IPR016177DNA-binding domain
PfamPF008471.7E-12125174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-26125180IPR001471AP2/ERF domain
PROSITE profilePS5103222.589125182IPR001471AP2/ERF domain
SMARTSM003807.9E-31125190IPR001471AP2/ERF domain
PRINTSPR003672.2E-9126137IPR001471AP2/ERF domain
PRINTSPR003672.2E-9148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEKKFIEHKT VTKKLVKPGF MSSSFIPKTI RVTVTDNDAT DSSSEDEGFK NGFVQITRKS  60
VKEIRFQECS TLSNKNNKKK PAVCTSGTSL YSEETKNKNG VVGECCLKQD NNNKDKDIKN  120
VVHQKFRGVR RRPWGRWAAE IRDPRLRRRK WLGTFDTAEE AALVYDRAAI DYRGADAVTN  180
IIKPPQKHHQ QQQQQQQKKT LSKNVCDKNV NVVDVNDCVE SDTNKEECNG SSSCSSGIEI  240
WSEKMNDQEW IKEISGEKYL DLDDGFMFDD SFGSYNEPVI TTMVSNESEC IIDNIPFHLE  300
EDFESCKWEV DNYFNDTLSM H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-18124180158ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-18124180461ATERF1
3gcc_A3e-18124180461ATERF1
5wx9_A8e-181231811271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129149RRRPWGRWAAEIRDPRLRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444027.11e-110ethylene-responsive transcription factor CRF6
TrEMBLA0A2Z6NAC00.0A0A2Z6NAC0_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-33cytokinin response factor 4