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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Tp57577_TGAC_v2_mRNA27926 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family |
ERF |
Protein Properties |
Length: 322aa MW: 36858.1 Da PI: 6.0176 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Tp57577_TGAC_v2_mRNA27926 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 6e-19 | 125 | 174 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +grW+AeIrdp r +r +lg+f+taeeAa +++a+ ++g
Tp57577_TGAC_v2_mRNA27926 125 KFRGVRRRP-WGRWAAEIRDP-----RlrRRKWLGTFDTAEEAALVYDRAAIDYRG 174
89*******.**********9.....445***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MEKKFIEHKT VTKKLVKPGF MSSSFIPKTI RVTVTDNDAT DSSSEDEGFK NGFVQITRKS 60 VKEIRFQECS TLSNKNNKKK PAVCTSGTSL YSEETKNKNG VVGECCLKQD NNNKDKDIKN 120 VVHQKFRGVR RRPWGRWAAE IRDPRLRRRK WLGTFDTAEE AALVYDRAAI DYRGADAVTN 180 IIKPPQKHHQ QQQQQQQKKT LSKNVCDKNV NVVDVNDCVE SDTNKEECNG SSSCSSGIEI 240 WSEKMNDQEW IKEISGEKYL DLDDGFMFDD SFGSYNEPVI TTMVSNESEC IIDNIPFHLE 300 EDFESCKWEV DNYFNDTLSM H*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gcc_A | 2e-18 | 124 | 180 | 1 | 58 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-18 | 124 | 180 | 4 | 61 | ATERF1 |
3gcc_A | 3e-18 | 124 | 180 | 4 | 61 | ATERF1 |
5wx9_A | 8e-18 | 123 | 181 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 129 | 149 | RRRPWGRWAAEIRDPRLRRRK |