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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2729 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 267aa MW: 29852.8 Da PI: 7.1331 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.5 | 3.3e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77 lp+G++F+P+d+e++++ L+k + ++++ + evd i++++P++Lp vk++ + ++fF+++ k+y+tg+rk+r+ Tp57577_TGAC_v2_mRNA2729 58 LPKGVKFDPSDKEIIWHLLAKV-GVGNlqphpfVDEFIITLEVDdgICYTHPQNLP-GVKQDGNATHFFHRAIKAYNTGTRKRRK 140 799************7777665.33333576654444454455335**********.77888999*******************8 PP NAM 78 tk.....sgyWkatgkdkevlskkgelvglkktLvfykgra..pkgektdWvmheyrl 128 ++ + +W++tg++k+v+ +g+++g+kk++v+y +a k+ekt+Wvmh+y+l Tp57577_TGAC_v2_mRNA2729 141 IHdqdfgDVRWHKTGRTKPVIL-NGAQKGCKKIMVLYMSSAggGKAEKTNWVMHQYHL 197 5555555889************.999***********6554115667*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-39 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.921 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MAGPSWLVDK SRIATKIKCA SGACDPKSIT WKSNPTKTCP NCQHVIDNSN LAKEWPGLPK 60 GVKFDPSDKE IIWHLLAKVG VGNLQPHPFV DEFIITLEVD DGICYTHPQN LPGVKQDGNA 120 THFFHRAIKA YNTGTRKRRK IHDQDFGDVR WHKTGRTKPV ILNGAQKGCK KIMVLYMSSA 180 GGGKAEKTNW VMHQYHLGTE EDEKDGEFVI SEVFYQQQHV KLGDIDEQDI TEATEETIIK 240 VDPVTPKSVT PEPPHNERQY SDVDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2729 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT139372 | 0.0 | BT139372.1 Medicago truncatula clone JCVI-FLMt-21L19 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614421.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-129 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2Z6LS14 | 0.0 | A0A2Z6LS14_TRISU; Uncharacterized protein | ||||
STRING | AES97378 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-131 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2729 |